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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGATGGAATGGAGCACTACTGCTTAGAAGATGCTCATATTGTCAACCTCTTCTCGTTCTCAAAGGCTTATGGAATGATGGGGTGGCGTGTAGGATACgtgagtgcatcatactcttcatttaccgttttcttatgctttacgcctaccccaacctgcttgcagctagacttttttttgctcctcctcctcctcctgctgttaattaccactgtaccagttagtcacacatgaactgtctgctgcag

Basic information

species Zea mays
transcript GRMZM2G107639_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107639_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g08270.1 (Oryza sativa), 5'ss of exon 9
GTATGATGGAATGGAGCACTACTGCTTAGAAGATGCTCATATTGTCAACCTCTTCTCGTTCTCAAAGGCTTATGGAATGATGGGGTGGCGTGTAGGATACgtgagtgcatcatactcttcatttaccgttttcttatgctttacgcctaccccaacctgcttgcagctagacttttttttgctcctcctcctcctcctgctgttaattaccactgtaccagttagtcacacatgaactgtctgctgcag
||||||||||||||||||||| |||||||| | |  ||| ||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| |||    |   ||||   | |  |  | |||    || |     |    || |||   |||   ||| |||     ||||  |           |  ||                                               
GTATGATGGAATGGAGCACTATTGCTTAGAGGGTAATCACATTGTCAACCTCTTCTCATTCTCGAAGGCTTACGGAATGATGGGCTGGCGTGTAGGATACgtaagtttgcctctctctctctctctctctctctctctctctctctttctttcatcct--ctgc--ttaggcttgaaaatgctgatgtaagagtcaatattgag---------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148950037|gb|EC895569.2|EC895569
EST:     TCTTCTCGTTCTCAAAGGCTTATGGAATGATGGGGTGGCGTGTAGGATAC                         ATTGCATTTCCAAATGAAGCTGATGGCTTCCACGATCAGCTCCTCAAGGTG
genomic: TCTTCTCGTTCTCAAAGGCTTATGGAATGATGGGGTGGCGTGTAGGATACgtgagtgcat ... tctgctgcagATTGCATTTCCAAATGAAGCTGATGGCTTCCACGATCAGCTCCTCAAGGTG
EST: gi|78027605|gb|DV495992.1|DV495992
EST:     ATGGGGTGGCGTGTAGGATAC                         ATTGCATTTCCAAATGAAGCTGATGGCTTCCACGATCAGCTCCTCAAAGTG
genomic: ATGGGGTGGCGTGTAGGATACgtgagtgcat ... tctgctgcagATTGCATTTCCAAATGAAGCTGATGGCTTCCACGATCAGCTCCTCAAGGTG
EST: gi|76017053|gb|DT944223.1|DT944223
EST:     TCTTCTCGTTCTCAAAGGCTTATGGAATGATGGGGTGGCGTGTAGGATAC                         ATTGCATTTCCAAATGAAGCTGATGGCTTCCACGATCAGCTCCTCAAGGTG
genomic: TCTTCTCGTTCTCAAAGGCTTATGGAATGATGGGGTGGCGTGTAGGATACgtgagtgcat ... tctgctgcagATTGCATTTCCAAATGAAGCTGATGGCTTCCACGATCAGCTCCTCAAGGTG
EST: gi|31357857|gb|CD442214.1|CD442214
EST:     TCTTCTCGTTCTCAAAGGCTTATGGAATGATGGGGTGGCGTGTAGGATAC                         ATTGCATTTCCAAATGAAGCTGATGGCTTCCACGATCAGCTCCTCAAAGTG
genomic: TCTTCTCGTTCTCAAAGGCTTATGGAATGATGGGGTGGCGTGTAGGATACgtgagtgcat ... tctgctgcagATTGCATTTCCAAATGAAGCTGATGGCTTCCACGATCAGCTCCTCAAGGTG
EST: gi|149051688|gb|EE155800.2|EE155800
EST:     TCTTCTCGTTCTCAAAGGCTTATGGAATGATGGGGTGGCGTGTAGGATAC                         ATTGCATTTCCAAATGAAGCTGATGGCTTCCACGATCAGCTCCTCAAGGTG
genomic: TCTTCTCGTTCTCAAAGGCTTATGGAATGATGGGGTGGCGTGTAGGATACgtgagtgcat ... tctgctgcagATTGCATTTCCAAATGAAGCTGATGGCTTCCACGATCAGCTCCTCAAGGTG
EST: gi|67011573|gb|CO440322.1|CO440322
EST:     TCTTCTCGTTCTCAAAGGCTTATGGAATGATGGGGTGGCGTGTAGGATAC                         ATTGCATTTCCAAATGAAGCTGATGGCTTCCACGATCAGCTCCTCAAAGTG
genomic: TCTTCTCGTTCTCAAAGGCTTATGGAATGATGGGGTGGCGTGTAGGATACgtgagtgcat ... tctgctgcagATTGCATTTCCAAATGAAGCTGATGGCTTCCACGATCAGCTCCTCAAGGTG
EST: gi|211043539|gb|FL214489.1|FL214489
EST:     TCTTCTCGTTCTCAAAGGCTTATGGAATGATGGGGTGGCGTGTAGGATAC                         ATTGCATTTCCAAATGAAGCTGATGGCTTCCACGATCAGCTCCTCAAAGTG
genomic: TCTTCTCGTTCTCAAAGGCTTATGGAATGATGGGGTGGCGTGTAGGATACgtgagtgcat ... tctgctgcagATTGCATTTCCAAATGAAGCTGATGGCTTCCACGATCAGCTCCTCAAGGTG