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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTGCACCATGGAAATGGCACACAAGAGATATTCGACGGGGACAAAACAgtgagtcatcctctttccttttattgttgtggctttctatttcttttaatgtcacagaatagcaaaattcaaacctgtgcctattcattttttcctgctg...

Basic information

species Zea mays
transcript GRMZM2G107309_T06
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60397976|gb|DN230792.1|DN230792
EST:     ATGTGCACCATGGAAATGGCACACAAGAGATATTCGACAGGGACAAAACA                         GTCTTGTACATATCATTACATCGTCATGAGGATGGAAACTTTTACCCTGGA
genomic: ATGTGCACCATGGAAATGGCACACAAGAGATATTCGACGGGGACAAAACAgtgagtcatc ... tccatttcagGTCTTGTACATATCATTACATCGTCATGAGGATGGAAACTTTTACCCTGGA
EST: gi|211416077|gb|FK952655.1|FK952655
EST:     ATGTGCACCATGGAAATGGCACACAAGAGATGTTCGACGGGGACAAAACA                         GTCTTGTACATATCATTACATCGTCATGAGGATGGAAACTTTTACCCTGGA
genomic: ATGTGCACCATGGAAATGGCACACAAGAGATATTCGACGGGGACAAAACAgtgagtcatc ... tccatttcagGTCTTGTACATATCATTACATCGTCATGAGGATGGAAACTTTTACCCTGGA
EST: gi|211416079|gb|FK952657.1|FK952657
EST:     TATTCGACGGGGACAAAACA                         GTCTTGTACATATCATTACATCGTCATGAGGATGGAAACTTTTACCCTGGA
genomic: TATTCGACGGGGACAAAACAgtgagtcatc ... tccatttcagGTCTTGTACATATCATTACATCGTCATGAGGATGGAAACTTTTACCCTGGA
EST: gi|9732030|gb|BE510782.1|BE510782
EST:     ATGTGCACCATGGAAATGGCACACAAGAGATATTCGACAGGGACAAAACA                         GTCTTGTACATATCATTACATCGTCATGAGGATGGAAACTTTTACCCTGGA
genomic: ATGTGCACCATGGAAATGGCACACAAGAGATATTCGACGGGGACAAAACAgtgagtcatc ... tccatttcagGTCTTGTACATATCATTACATCGTCATGAGGATGGAAACTTTTACCCTGGA
EST: gi|211416082|gb|FK952660.1|FK952660
EST:     ATGTGCACCATGGAAATGGCACACAAGAGATGTTCGACGGGGACAAAACA                         GTCTTGTACATATCATTACATCGTCATGAGGATGGAAACTTTTACCCTGGA
genomic: ATGTGCACCATGGAAATGGCACACAAGAGATATTCGACGGGGACAAAACAgtgagtcatc ... tccatttcagGTCTTGTACATATCATTACATCGTCATGAGGATGGAAACTTTTACCCTGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGTGCACCATGGAAATGGCACACAAGAGATATTCGACGGGGACAAAACAgtgagtcatcctctttccttttattgttgtggctttctatttcttttaatgtcacagaatagcaaaattcaaacctgtgcctattcattttttcctgctg

- - - -  CATGGA
- - - - - - - - - - - -  AAGAGA