1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTATCCTTTCCGAACAAAATGCAATCGTCCCCAATGTGGAGCAGAAAAGCCATCACAAACAAACAATGTGAATGGTTCAGCGACAGATCAGGACAATCAGgtctgtgtttcagaaccttcagtatggtcctcaacatttgctgcacctttatttagaacattaacttgcatgcctattatatatttaatactgtttttaatcattttgttgccctcatatttgattgcatatagcttgatttatcatgttacag
species | Zea mays |
transcript | GRMZM2G107106_T07 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CATCACAAACAAACAATGTGAATGGTTCAGCGACAGATCAGGACAATCAG TGAGTCCTAGGACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCTAGEST: gi|60354809|gb|DN221782.1|DN221782
genomic: CATCACAAACAAACAATGTGAATGGTTCAGCGACAGATCAGGACAATCAGgtctgtgttt ... catgttacagTGAGTCCTAGGACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: CATCACAAACAAACAATGTGAATGGTTCAGCGACAGATCAGGACAATCAG TGAGTCCTAGGACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGEST: gi|71765407|gb|DR963344.1|DR963344
genomic: CATCACAAACAAACAATGTGAATGGTTCAGCGACAGATCAGGACAATCAGgtctgtgttt ... catgttacagTGAGTCCTAGGACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: CATCCCAAACAAACAATGTGAATGGTTCAGCGACAGATCAGGACAATCAG TGAGTCCTAGGACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGEST: gi|86469486|gb|DY235856.1|DY235856
genomic: CATCACAAACAAACAATGTGAATGGTTCAGCGACAGATCAGGACAATCAGgtctgtgttt ... catgttacagTGAGTCCTAGGACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: CATCACAAACAAACAATGTGAATGGTTCAGCGACAGATCAGGACAATCAG TGAGTCCTAGGACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGEST: gi|71760238|gb|DR958175.1|DR958175
genomic: CATCACAAACAAACAATGTGAATGGTTCAGCGACAGATCAGGACAATCAGgtctgtgttt ... catgttacagTGAGTCCTAGGACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: CATCACAAACAAACAATGTGAATGGTTCAGCGACAGATCAGGACAATCAG TGAGTCCTAGGACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGEST: gi|60336833|gb|DN203806.1|DN203806
genomic: CATCACAAACAAACAATGTGAATGGTTCAGCGACAGATCAGGACAATCAGgtctgtgttt ... catgttacagTGAGTCCTAGGACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: CATCACAAACAAACAATGTGAATGGTTCAGCGACAGATCAGGACAATCAG TGAGTCCTAGGACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAGEST: gi|71761651|gb|DR959588.1|DR959588
genomic: CATCACAAACAAACAATGTGAATGGTTCAGCGACAGATCAGGACAATCAGgtctgtgttt ... catgttacagTGAGTCCTAGGACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: CATCACAAACAAACAATGTGAATGGTTCAGCGACAGATCAGGACAATCAG TGAGTCCTAGGACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
genomic: CATCACAAACAAACAATGTGAATGGTTCAGCGACAGATCAGGACAATCAGgtctgtgttt ... catgttacagTGAGTCCTAGGACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATCCTTTCCGAACAAAATGCAATCGTCCCCAATGTGGAGCAGAAAAGCCATCACAAACAAACAATGTGAATGGTTCAGCGACAGATCAGGACAATCAGgtctgtgtttcagaaccttcagtatggtcctcaacatttgctgcacctttatttagaacattaacttgcatgcctattatatatttaatactgtttttaatcattttgttgccctcatatttgattgcatatagcttgatttatcatgttacag
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