1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGAAGGAAAGTGGGCTAGAGGTCCTTGGTCAGCTAGgtaggttaactttggtaaacatattcgttctcatgtttgtactgtataagtatagcacacgccagttgtttccatggcacatgttaaatttttactgaactctggcaaacttcag
species | Zea mays |
transcript | GRMZM2G107089_T02 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AAGGAAGCTATTTCTGAAGGAAAGTGGGCTAGAGGTCCTTGGTCAGCTAG CGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCACCATCAGATGEST: gi|4646967|gb|AI622042.1|AI622042
genomic: AAGGAAGCTATTTCTGAAGGAAAGTGGGCTAGAGGTCCTTGGTCAGCTAGgtaggttaac ... caaacttcagCGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCACCATCAGATG
EST: AAGGAAGCTATTTCTGAAGGAAAGTGGGCTAGAGGTCCTTGGTCAGCTAG CGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCACCATCAGATGEST: gi|32832964|gb|CD972642.1|CD972642
genomic: AAGGAAGCTATTTCTGAAGGAAAGTGGGCTAGAGGTCCTTGGTCAGCTAGgtaggttaac ... caaacttcagCGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCACCATCAGATG
EST: AAGGAAGCTATTTCTGAAGGAAAATGGGCTAGAGGTCCTTGGTCAGCTAG CGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCACCATCAGATGEST: gi|32833724|gb|CD973402.1|CD973402
genomic: AAGGAAGCTATTTCTGAAGGAAAGTGGGCTAGAGGTCCTTGGTCAGCTAGgtaggttaac ... caaacttcagCGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCACCATCAGATG
EST: AAGGAAGCTATTTCTGAAGGAAAATGGGCTAGAGGTCCTTGGTCAGCTAG CGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCACCATCAGATGEST: gi|32834986|gb|CD974664.1|CD974664
genomic: AAGGAAGCTATTTCTGAAGGAAAGTGGGCTAGAGGTCCTTGGTCAGCTAGgtaggttaac ... caaacttcagCGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCACCATCAGATG
EST: AAGGAAGCTATTTCTGAAGGAAAATGGGCTAGAGGTCCTTGGTCAGCTAG CGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCACCATCAGATGEST: gi|5006223|gb|AI712285.1|AI712285
genomic: AAGGAAGCTATTTCTGAAGGAAAGTGGGCTAGAGGTCCTTGGTCAGCTAGgtaggttaac ... caaacttcagCGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCACCATCAGATG
EST: AAGGAAGCTATTTCTGAAGGAAAGTGGGCTAGAGGTCCTTGGTCAGCTAG CGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCCCCATCAGATGEST: gi|148962200|gb|EE013015.2|EE013015
genomic: AAGGAAGCTATTTCTGAAGGAAAGTGGGCTAGAGGTCCTTGGTCAGCTAGgtaggttaac ... caaacttcagCGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCACCATCAGATG
EST: AAGGAAGCTATTTCTGAAGGAAAGTGGGCTAGAGGTCCTTGGTCAGCTAG CGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCACCATCAGATGEST: gi|76018747|gb|DT945917.1|DT945917
genomic: AAGGAAGCTATTTCTGAAGGAAAGTGGGCTAGAGGTCCTTGGTCAGCTAGgtaggttaac ... caaacttcagCGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCACCATCAGATG
EST: AAGGAAGCTATTTCTGAAGGAAAGTGGGCTAGAGGTCCTTGGTCAGCTAG CGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCACCATCAGATGEST: gi|60397373|gb|DN230189.1|DN230189
genomic: AAGGAAGCTATTTCTGAAGGAAAGTGGGCTAGAGGTCCTTGGTCAGCTAGgtaggttaac ... caaacttcagCGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCACCATCAGATG
EST: AAGGAAGCTATTTCTGAAGGAAAGTGGGCTAGAGGTCCTTGGTCAGCTAG CGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCACCATCAGATGEST: gi|32864246|gb|CF003928.1|CF003928
genomic: AAGGAAGCTATTTCTGAAGGAAAGTGGGCTAGAGGTCCTTGGTCAGCTAGgtaggttaac ... caaacttcagCGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCACCATCAGATG
EST: AAGGAAGCTATTTCTGAAGGAAAATGGGCTAGAGGTCCTTGGTCAGCTAG CGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCACCATCAGATGEST: gi|83279137|gb|DV943145.1|DV943145
genomic: AAGGAAGCTATTTCTGAAGGAAAGTGGGCTAGAGGTCCTTGGTCAGCTAGgtaggttaac ... caaacttcagCGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCACCATCAGATG
EST: AAGGAAGCTATTTCTGAAGGAAAGTGGGCTAGAGGTCCTTGGTCAGCTAG CGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCACCATCAGATGEST: gi|32835396|gb|CD975074.1|CD975074
genomic: AAGGAAGCTATTTCTGAAGGAAAGTGGGCTAGAGGTCCTTGGTCAGCTAGgtaggttaac ... caaacttcagCGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCACCATCAGATG
EST: AAGGAAGCTATTTCTGAAGGAAAATGGGCTAGAGGTCCTTGGTCAGCTAG CGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCACCATCAGATGEST: gi|148954704|gb|EC900156.2|EC900156
genomic: AAGGAAGCTATTTCTGAAGGAAAGTGGGCTAGAGGTCCTTGGTCAGCTAGgtaggttaac ... caaacttcagCGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCACCATCAGATG
EST: AAGGAAGCTATTTTTGAAGGAAAGTGGGCTAGAGGTCCTTGGTCAGCTAG CGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCACCATCAGATGEST: gi|33091118|gb|CF051112.1|CF051112
genomic: AAGGAAGCTATTTCTGAAGGAAAGTGGGCTAGAGGTCCTTGGTCAGCTAGgtaggttaac ... caaacttcagCGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCACCATCAGATG
EST: AAGGAAGCTATTTCTGAAGGAAAATGGGCTAGAGGTCCTTGGTCAGCTAG CGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCACCATCAGATGEST: gi|149110508|gb|EE190454.2|EE190454
genomic: AAGGAAGCTATTTCTGAAGGAAAGTGGGCTAGAGGTCCTTGGTCAGCTAGgtaggttaac ... caaacttcagCGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCACCATCAGATG
EST: AAGGAAGCTATTTTTGAAGGAAAGTGGGCTAGAGGTCCTTGGTCAGCTAG CGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCCCCATCAGATGEST: gi|166641281|gb|EG143648.1|EG143648
genomic: AAGGAAGCTATTTCTGAAGGAAAGTGGGCTAGAGGTCCTTGGTCAGCTAGgtaggttaac ... caaacttcagCGATGCTGATGAGCTGAAAGTGAAAGAAGAGACCAGCGCCACCATCAGATG
EST: AAGGAAGCTATTTCTGAAGGAAAGTGGGCTAGAGGTCCTTGGTCAGCTAG CGATGCTGATGAGCTGAAAGTG
genomic: AAGGAAGCTATTTCTGAAGGAAAGTGGGCTAGAGGTCCTTGGTCAGCTAGgtaggttaac ... caaacttcagCGATGCTGATGAGCTGAAAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGAAGGAAAGTGGGCTAGAGGTCCTTGGTCAGCTAGgtaggttaactttggtaaacatattcgttctcatgtttgtactgtataagtatagcacacgccagttgtttccatggcacatgttaaatttttactgaactctggcaaacttcag
- - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT