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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTGTCTATGGAGCCTTCGATATTGGTGAACCATATAAAGGGTCGTCTAGATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAGgtaattgttttcctttgaaggattaccttgtctttttttgttctagttttagggacacctttttaatcttctcctgcttgttgattgatgtctgcaaacc...

Basic information

species Zea mays
transcript GRMZM2G107089_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107089_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os07g07060.1 (Oryza sativa), 5'ss of exon 7
GAGTGTCTATGGAGCCTTCGATATTGGTGAACCATATAAAGGGTCGTCTAGATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAGgtaattgttttcctttgaaggattaccttgtctttt--tttgttctagttttagggacacctttttaatcttctcctgcttgttgattgatgtctgcaaacc
||||||||||||| || || ||| ||||| |||||||||| ||||||||||  || || |||||||||||| |||||||||||||  ||||||||||||||||  | | |   |  |  | |  || ||||| |    | |  | |  | | |    |   || |  || |   | | |   |           | |  | |
GAGTGTCTATGGATCCATCAATACTGGTGGACCATATAAAAGGTCGTCTAGTGGAAATCCAAGCATCCCTTCTACAGAAGGCCATTGCATTCCGTGATAGgta-ctatctgtttacgctgaacgac-ttgtcctaaagtatagtttgttctcaattcctatttatgcatttctacatacgcataatagagaacttactcaac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211038835|gb|FL468655.1|FL468655
EST:     GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAG                         TAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGA
genomic: GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAGgtaattgttt ... attcttgcagTAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGA
EST: gi|4646967|gb|AI622042.1|AI622042
EST:     GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAG                         TAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGA
genomic: GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAGgtaattgttt ... attcttgcagTAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGA
EST: gi|32832964|gb|CD972642.1|CD972642
EST:     GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAG                         TAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGA
genomic: GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAGgtaattgttt ... attcttgcagTAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGA
EST: gi|32833724|gb|CD973402.1|CD973402
EST:     GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAG                         TAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGA
genomic: GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAGgtaattgttt ... attcttgcagTAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGA
EST: gi|32834986|gb|CD974664.1|CD974664
EST:     GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAG                         TAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGA
genomic: GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAGgtaattgttt ... attcttgcagTAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGA
EST: gi|5006223|gb|AI712285.1|AI712285
EST:     GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAG                         TAACATTGTCGACGTAAGCTCATATGGTGAGCTGAAGGAAGCTATTTCTGA
genomic: GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAGgtaattgttt ... attcttgcagTAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGA
EST: gi|148962200|gb|EE013015.2|EE013015
EST:     GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAG                         TAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGA
genomic: GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAGgtaattgttt ... attcttgcagTAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGA
EST: gi|76018747|gb|DT945917.1|DT945917
EST:     GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAG                         TAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGA
genomic: GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAGgtaattgttt ... attcttgcagTAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGA
EST: gi|60397373|gb|DN230189.1|DN230189
EST:     GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAG                         TAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGA
genomic: GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAGgtaattgttt ... attcttgcagTAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGA
EST: gi|32864246|gb|CF003928.1|CF003928
EST:     GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAG                         TAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGA
genomic: GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAGgtaattgttt ... attcttgcagTAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGA
EST: gi|83279137|gb|DV943145.1|DV943145
EST:     GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAG                         TAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGA
genomic: GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAGgtaattgttt ... attcttgcagTAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGA
EST: gi|32835396|gb|CD975074.1|CD975074
EST:     GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAG                         TAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGA
genomic: GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAGgtaattgttt ... attcttgcagTAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGA
EST: gi|148954704|gb|EC900156.2|EC900156
EST:     GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAG                         TAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTTTGA
genomic: GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAGgtaattgttt ... attcttgcagTAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGA
EST: gi|33091118|gb|CF051112.1|CF051112
EST:     GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAG                         TAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGA
genomic: GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAGgtaattgttt ... attcttgcagTAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGA
EST: gi|149110508|gb|EE190454.2|EE190454
EST:     GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAG                         TAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTTTGA
genomic: GATGACATACAAGCATCCCTTTTACAGAAGGCCATAACATTCCGTGATAGgtaattgttt ... attcttgcagTAACATTGTCGACGTAAGCTCATATGGCGAGCTGAAGGAAGCTATTTCTGA