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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTGGCATAGCTAACTTCACTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaagaccactcactttagaatcctcactggtgcttggcaccactcatatctgttcacctaattgattcttcacctgttttatcgccacacaattcactttcag

Basic information

species Zea mays
transcript GRMZM2G107082_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107082_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os11g47330.1 (Oryza sativa), 5'ss of exon 9
TGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTGGCATAGCTAACTTCACTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaa---gaccactcactttagaatcctcactggtg----------cttggcaccactcatatctgttcacctaattgattcttcacctgttttatcgccacacaattcactttcag
|||||||||||||||||| |||||||||||||| || |||||||||||||| || || |   ||||||| |  |||||||| || |||||||| ||||||||| |||    |||| || | | ||||||  |  |   ||          |||  ||||| |   |  |||||| || |||||||      |   |  |||       || |  |||||||
TGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGGGGTATAGCTAACTTCACCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgctgacccctaaatctagaattgtggccaatgttctctaaaacttatcaccagttccacatgttcatctgattgattgactgtcaactgaatc----tgaaacttgctttcag

upper sequence: GRMZM2G107082_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os11g47120.1 (Oryza sativa), 5'ss of exon 9
TGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTGGCATAGCTAACTTCACTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaa---gaccactcactttagaatcctcactggtg----------cttggcaccactcatatctgttcacctaattgattcttcacctgttttatcgccacacaattcactttcag
|||||||||||||||||| |||||||||||||| || |||||||||||||| || || |   ||||||| |  |||||||| || |||||||| ||||||||| |||    |||| || | | | ||||  |  |   ||          |||  ||||| |   |  |||||| || |||| ||      |   |  |||       || |  |||||||
TGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGGGGTATAGCTAACTTCACCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgctgacccctaaatctcgaattgtggccaatgttctctaaaacttatcaccagttccacatgttcatctgattggttgactgtcaactgaatc----tgaaacttgctttcag

upper sequence: GRMZM2G107082_T01 (Zea mays), 5'ss of exon 9
lower sequence: Vv14s0060g00550.t01 (Vitis vinifera), 5'ss of exon 10
TGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTGGCATAGCTAACTTCACTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtac--ctaagaccactcactttagaatcctcactggtgcttggcaccactcatatctgttcacctaattgattcttcacctgttttatcgccacacaattcactttcag----
||||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||| |||| |||||||| ||  |||| ||  | | |||||||||      |||   | | | | |      ||   |  || |||   | | ||  |||       | | ||  | ||||| || |||| |  |        |   |||| |    
TGATGGCCGTAAGAGAGCCCTTCTCATTGGAGGGGGTATTGCTAACTTCACTGATGTTGCTGCCACTTTCAATGGGATTGTCCGGGCTCTGAAGGAGAAGgtgtgatcaagttgaattattct----ctctggatcttggttgtttcaattctcatcctaaattcaagtt--tgcttcaacttttttttttctttttttctttttttctgacag

upper sequence: GRMZM2G107082_T01 (Zea mays), 5'ss of exon 9
lower sequence: PP1S7_156V6.2 (Physcomitrella patens), 5'ss of exon 11
TGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTGGCATAGCTAACTTCACTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaagaccactcactttagaatcctcactggtgcttggcaccactcatatctgttcacctaattgattcttcacctgttttatcg-ccacacaattcactt-tcag
|||||| |||   ||||| ||  || |||||||||| || || ||||||||||| |||||| | ||||||||||| || || || || || ||||| ||||||      |   || |     | ||   ||   ||| |||    || |   |    ||    | | | |  |      | |   |  | ||||| | |    |  ||||
TGATGGACGCCGAAGAGCGCTAGTCGTTGGAGGTGGAATTGCCAACTTCACTGACGTTGCTGCTACATTCAATGGTATTATTCGTGCTTTCAGGGAAAAGgta-----aaattctgagccctgtatgtgcatctgtggttgta--cagttggactgattactatgaatcacgcacggaatctgacacagtccacatattctgttcatcag

upper sequence: GRMZM2G107082_T01 (Zea mays), 5'ss of exon 9
lower sequence: PP1S63_54V6.2 (Physcomitrella patens), 5'ss of exon 12
TGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTGGCATAGCTAACTTCACTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaagaccactcactttagaatcctcactggtgcttggcaccactcatatctgttcacctaattgattcttcacctgttttatcgccacacaattcactttcag
||||||||||||||||||  |  |  | || || ||||| ||||||||||||||||||||  | || ||||| |||||||| |||||| |  | || ||||||          ||  | | ||       | | | |||    ||   |||  | ||   | ||  || |    |    |||   ||   ||  |  ||    |||||
TGATGGCCGCAAGAGAGCTTTGGTTGTCGGTGGAGGCATTGCTAACTTCACTGATGTTGCAGCAACTTTCAACGGCATCATTCGAGCCATGCGTGAAAAGgtaa--------gcttccctgag-------atttgagct----acttttcacttttgcgaatctttttaaaaaatgtggtgtaacattttcattcgttttctgttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211099628|gb|FL031896.1|FL031896
EST:     CTGATGTTGCTACTACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGTTGAAGGCTTCAAGGATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|6851489|gb|AW352499.1|AW352499
EST:     CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|60357576|gb|DN224549.1|DN224549
EST:     CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|4966766|gb|AI691622.1|AI691622
EST:     CTGATGTTGCTACCACATTCAATGGTATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGCTGAAGGCTTCAAGGATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|89248869|gb|DY620655.1|DY620655
EST:     CTGATGGTGTTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|60352571|gb|DN219544.1|DN219544
EST:     CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|71769086|gb|DR967023.1|DR967023
EST:     GGCATCTTCCGAGCCTTAAGGGAGGAAGG                         GAATCCAAGTTGAAGGCTTCAAGAATGCACATTTTATGTCCGCCGAGGGT
genomic: GGCATCATCCGAGCCTTAAGGGA-GAA-Ggtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACA-TTTATGTCCGCCGA-GGT
EST: gi|60354935|gb|DN221908.1|DN221908
EST:     CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|12969143|gb|BG266088.1|BG266088
EST:     CTGATGTTGCTACCACATTCAATGGTATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGCTGAAGGCTTCAAGGATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|148953531|gb|EE153040.2|EE153040
EST:     CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|211099629|gb|FL031897.1|FL031897
EST:     CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|13177932|gb|BG349115.1|BG349115
EST:     CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|60398717|gb|DN231533.1|DN231533
EST:     CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|3191853|gb|AI001299.1|AI001299
EST:     CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|113703225|gb|EE680729.1|EE680729
EST:     CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|32851220|gb|CD990901.1|CD990901
EST:     CTGATGTTGCTACTACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGTTGAAGGCTTCAAGGATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|13177931|gb|BG349114.1|BG349114
EST:     CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|5922366|gb|AW055655.1|AW055655
EST:     CTGATGTTGCTACCACATTCAATGGTATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGCTGAAGGCTTCAAGGATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|4827542|gb|AI668234.1|AI668234
EST:     CTGATGTTGCTACCACATTCAATGGTATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGCTGAAGGCTTCAAGGATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|211182331|gb|FL049128.1|FL049128
EST:     GAGCCTTAAGGGAGAAG                         GAATCCAAGTTGAAGGCTTCAAGGATGCACATTTATGTCCGCCGAGGTGGT
genomic: GAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|211182330|gb|FL049127.1|FL049127
EST:     CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|5871775|gb|AW018246.1|AW018246
EST:     CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|67017038|gb|CO445787.1|CO445787
EST:     CTGATGTTGCTACCACATTCAATGGTATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGCTGAAGGCTTCAAGGATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|60401566|gb|DN234373.1|DN234373
EST:     CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|78024963|gb|DV493350.1|DV493350
EST:     CTGATGTTGCTACCACATTCAATGGTATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGCTGAAGGCTTCAAGGATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|50332311|gb|CO527437.1|CO527437
EST:     CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|16378083|gb|BI992269.1|BI992269
EST:     CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|211182332|gb|FL049129.1|FL049129
EST:     ATCCGAGCCTTAAGGGAGAAG                         GAATCCAASTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
genomic: ATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|60395413|gb|DN228283.1|DN228283
EST:     CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|211420152|gb|FL463211.1|FL463211
EST:     CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|211481515|gb|FL480068.1|FL480068
EST:     CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|113703355|gb|EE680859.1|EE680859
EST:     CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAG                         GAATCCTAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|211182329|gb|FL049126.1|FL049126
EST:     CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
EST: gi|211182333|gb|FL049130.1|FL049130
EST:     CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAG                         GAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT
genomic: CTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaaga ... tcactttcagGAATCCAAGTTGAAGGCTTCAAGAATGCACATTTATGTCCGCCGAGGTGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGATGGCCGCAAGAGAGCCCTTCTCATTGGAGGTGGCATAGCTAACTTCACTGATGTTGCTACCACATTCAATGGCATCATCCGAGCCTTAAGGGAGAAGgtacctaagaccactcactttagaatcctcactggtgcttggcaccactcatatctgttcacctaattgattcttcacctgttttatcgccacacaattcactttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA