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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGACAAACCCTAAAAGTGCCATCAATGAGCATTTCTTACCACGTTTCCTGGATTTTATTGTATGGGGCCATGAGCATGAATGTCTTATTGATCCTCAGgtaacagcttgatatttccttttttgttattaaggactaaatggctttgctgagttgttgtgatatgtttttaaggaaaaaaactggtcatgcattcatacgtatatatactatctacag

Basic information

species Zea mays
transcript GRMZM2G106056_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G106056_T03 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os04g54340.1 (Oryza sativa), 5'ss of exon 9
AAAGACAAACCCTAAAAGTGCCATCAATGAGCATTTCTTACCACGTTTCCTGGATTTTATTGTATGGGGCCATGAGCATGAATGTCTTATTGATCCTCAGgtaacagcttgatatttcctt--ttttgttattaaggactaa-atggctttgctgagttgttgtgatatgtttttaaggaaaaaaactggtcatgcattcatacgtatatatactatctacag
||| |||||||||||||| || |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||   ||||   |||  ||  |||  || ||||  | |||  ||  | |||     |  | ||||   || || |                                              
AAAAACAAACCCTAAAAGCGCAATCAATGAGCATTTCTTACCACGTTTTCTGGACTTTATAGTATGGGGCCATGAGCATGAATGCCTTATTGATCCCCAGgtaatgacttggattttatttgatttcttttttaaaaaataacgtgaatatgcacttgtcatatgatcaattgtttatag-------------------------------------------

upper sequence: GRMZM2G106056_T03 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA14G12420.1 (Glycine max), 5'ss of exon 4
AAAGACAAACCCTAAAAGTGCCATCAATGAGCATTTCTTACCACGTTTCCTGGATTTTATTGTATGGGGCCATGAGCATGAATGTCTTATTGATCCTCAGgtaacagcttgatatttccttttttgttattaaggactaaatggctttgctgagttgttgtgatatgtttttaaggaaaaaaactggtcatgcattcatacgtatatatactatctacag
 || | ||| || |||| ||| || |||||||| ||||| ||| | ||||| || || ||||| ||||||||||||||||||||| |  |||| || |||||       || || ||    || | |||    ||   | || |   |            || | |||| |  |  |  || |    |  |   ||  | |                   
TAAAATAAATCCAAAAAATGCGATAAATGAGCACTTCTTGCCATGCTTCCTAGACTTCATTGTGTGGGGCCATGAGCATGAATGTTTGGTTGACCCGCAGgtg------tgctaattatacttgtcttaaatgggctcagattgacata-----------tgttgtgttctgcaaaagtaatatgtattttaattttctccag-----------------

upper sequence: GRMZM2G106056_T03 (Zea mays), 5'ss of exon 9
lower sequence: AT5G54260.1 (Arabidopsis thaliana), 5'ss of exon 9
AAAGACAAACCCTAAAAGTGCCATCAATGAGCATTTCTTACCACGTTTCCTGGATTTTATTGTATGGGGCCATGAGCATGAATGTCTTATTGATCCTCAGgtaacagcttgatatttccttttttgttattaaggactaaatggctttgctgagttgttgtgatatgtttttaaggaaaaaaactggtcatgcattcatacgtatatatactatctacag
 ||  ||||||| |||| ||| || | |||||| ||  | ||||||||||| || || ||||| |||||||||||||||||||| || || || || |||||    |    || |    |||   ||||||      |||||     ||  |      ||| |  ||  | |  |    ||||    | |  | ||   |                    
GAAATCAAACCCCAAAAATGCAATAAGTGAGCACTTTCTTCCACGTTTCCTCGACTTCATTGTGTGGGGCCATGAGCATGAATGCCTAATCGACCCCCAGgtccatgaaaaatttgatttttggagttattgcat-ttaaataagagtga-gccacaatgttacttgcctctttgagctaaaagctattaaacttttgaag-------------------

upper sequence: GRMZM2G106056_T03 (Zea mays), 5'ss of exon 9
lower sequence: Vv19s0014g03680.t01 (Vitis vinifera), 5'ss of exon 8
AAAGACAAACCCTAAAAGTGCCATCAATGAGCATTTCTTACCACGTTTCCTGGATTTTATTGTATGGGGCCATGAGCATGAATGTCTTATTGATCCTCAGgtaacagcttgatatttccttttttgttattaaggactaaatggctttgctgagttgttgtgatatgtttttaaggaaaaaaactggtcatgcattcatacgtatatatactatctacag
||||||||| ||||||| ||| |||| ||||||||| |||||| | ||||| || || || || ||||| ||||| |||||||||||| |||||||||||||  || |   ||||||  || ||| ||  ||        ||| |||| ||   ||| |    ||| |  ||   |        | ||  ||| || |   |                  
AAAGACAAATCCTAAAAATGCAATCAGTGAGCATTTTTTACCAAGGTTCCTAGACTTCATAGTGTGGGGGCATGAACATGAATGTCTTGTTGATCCTCAGgtggca-ccaaatatttatttgtttttttctataactc--atgactttactt--ttgctacagtatctcattggagg-------tcgttttgctttgaacag------------------