1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGAAGAAAAACTTGATGGTGATGCTGCATTGAACAAATTCTTCCGTGACATCTACAAGGATGCTGATGAAGATATGCGGAGGGCCATGATGAAGTCATTCgtacgtgatgtttggcccagctaatactggatttggagccaactgtattttatgtctatactcacgtatccttgcccgtttctgcag
species | Zea mays |
transcript | GRMZM2G105019_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCTACAAGGATGCTGATGAAGATATGCGGAGGGCCATGATGAAGTCATTC GTGGAATCAAATGGCACTGTTCTCTCAACCAATTGGAAAGATGTTGGAGCAEST: gi|211436238|gb|FL480984.1|FL480984
genomic: TCTACAAGGATGCTGATGAAGATATGCGGAGGGCCATGATGAAGTCATTCgtacgtgatg ... gtttctgcagGTGGAATCAAATGGCACTGTTCTCTCAACCAATTGGAAAGATGTTGGAGCA
EST: TCTACAAGGATGCTGATGAAGATATGCGGAGGCCCATGATGAAGTCATTC GTGGAATCAAATGGCACTGTTCTCTCAACCAATTGGAAAGATGTTGGAGCAEST: gi|40337441|gb|CK371511.1|CK371511
genomic: TCTACAAGGATGCTGATGAAGATATGCGGAGGGCCATGATGAAGTCATTCgtacgtgatg ... gtttctgcagGTGGAATCAAATGGCACTGTTCTCTCAACCAATTGGAAAGATGTTGGAGCA
EST: TCTACAAGGATGCTGATGAAGATATGCGGAGGGCCATGATGAAGTCATTC GTGGAATCAAATGGCACTGTTCTCTCAACCAATTGGAAAGATGTTGGAGCAEST: gi|166691075|gb|EG165850.1|EG165850
genomic: TCTACAAGGATGCTGATGAAGATATGCGGAGGGCCATGATGAAGTCATTCgtacgtgatg ... gtttctgcagGTGGAATCAAATGGCACTGTTCTCTCAACCAATTGGAAAGATGTTGGAGCA
EST: ATGCTGATGAAGATATGCGGAGGGCCATGATGAAGTCATTC GTGGAATCAAATGGCACTGTTCTCTCAACCAATTGGAAAGATGTTGGAGEST: gi|8383133|gb|BE056076.1|BE056076
genomic: ATGCTGATGAAGATATGCGGAGGGCCATGATGAAGTCATTCgtacgtgatg ... gtttctgcagGTGGAATCAAATGGCACTGTTCTCTCAACCAATTGGAAAGATGTTGGAG
EST: TCTACAAGGATGCTGATGAAGATATGCGGAGGGCCATGATGAAGTCATTC GTGGAATCAAATGGCACTGTTCTCTCAACCAATTGGAAAGATGTTGGAGCAEST: gi|166552843|gb|EG168280.1|EG168280
genomic: TCTACAAGGATGCTGATGAAGATATGCGGAGGGCCATGATGAAGTCATTCgtacgtgatg ... gtttctgcagGTGGAATCAAATGGCACTGTTCTCTCAACCAATTGGAAAGATGTTGGAGCA
EST: AGATATGCGGAGGGCCATGATGAAGTCATTC GTGGAATCAAATGGCACTGTTCTCTCAACCAATTGGAAAGATGTTGGAGCAEST: gi|166512918|gb|EG157470.1|EG157470
genomic: AGATATGCGGAGGGCCATGATGAAGTCATTCgtacgtgatg ... gtttctgcagGTGGAATCAAATGGCACTGTTCTCTCAACCAATTGGAAAGATGTTGGAGCA
EST: TGAAGATATGCGGAGGGCCATGATGAAGTCATTC GTGGAATCAAATGGCACTGTTCTCTCAACCAATTGGAAAGATGTTGGAGCAEST: gi|6031470|gb|AW076372.1|AW076372
genomic: TGAAGATATGCGGAGGGCCATGATGAAGTCATTCgtacgtgatg ... gtttctgcagGTGGAATCAAATGGCACTGTTCTCTCAACCAATTGGAAAGATGTTGGAGCA
EST: TCTACAAGGATGCTGATGAAGATATGCGGAGGGCCATGATGAAGTCATTC GTGGAATCAAATGGCACTGTTCTCTCAACCAATTGGAAAGATGTTGGAGCAEST: gi|32857112|gb|CD996793.1|CD996793
genomic: TCTACAAGGATGCTGATGAAGATATGCGGAGGGCCATGATGAAGTCATTCgtacgtgatg ... gtttctgcagGTGGAATCAAATGGCACTGTTCTCTCAACCAATTGGAAAGATGTTGGAGCA
EST: TCTACAAGGATGCTGATGAAGATATGCGGAGGGCCATGATGAAGTCATTC GTGGAATCAAATGGCACTGTTCTCTCAACCAATTGGAAAGATGTTGGAGCAEST: gi|13558772|gb|BG550127.1|BG550127
genomic: TCTACAAGGATGCTGATGAAGATATGCGGAGGGCCATGATGAAGTCATTCgtacgtgatg ... gtttctgcagGTGGAATCAAATGGCACTGTTCTCTCAACCAATTGGAAAGATGTTGGAGCA
EST: AAGGATGCTGATGAAGATATGCGGAGGGCCATGATGAAGTCATTC GTGGAATCAAATGGCACTGTTCTCTCAGCCAATTGGAAAGATGTTGGAGCAEST: gi|166539784|gb|EG136998.1|EG136998
genomic: AAGGATGCTGATGAAGATATGCGGAGGGCCATGATGAAGTCATTCgtacgtgatg ... gtttctgcagGTGGAATCAAATGGCACTGTTCTCTCAACCAATTGGAAAGATGTTGGAGCA
EST: TCTACAAGGATGCTGATGAAGATATGCGGAGGGCCATGATGAAGTCATTC GTGGAATCAAATGGCACTGTTCTC
genomic: TCTACAAGGATGCTGATGAAGATATGCGGAGGGCCATGATGAAGTCATTCgtacgtgatg ... gtttctgcagGTGGAATCAAATGGCACTGTTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGAAAAACTTGATGGTGATGCTGCATTGAACAAATTCTTCCGTGACATCTACAAGGATGCTGATGAAGATATGCGGAGGGCCATGATGAAGTCATTCgtacgtgatgtttggcccagctaatactggatttggagccaactgtattttatgtctatactcacgtatccttgcccgtttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA