1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAAGGAATCACAATACCAGATTACTCCTTGGCATGCTGAATCTTCAAATAATACAAGTGCTGCTGCACAGTCGCCTTCTCATCCTCCTGGAAATGCATTGgtttgttcgatatggcacaatgcttttcatcacatgtttctcggaattcatgcatgattgtagattctaactcccatcacttttttttccag
species | Zea mays |
transcript | GRMZM2G104377_T02 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATACAAGTGCTGCTGCACAGTCGCCTTCTCATCCTCCTGGAAATGCATTG ATCAAAGCCAACCTTGACATTGTGCCCCAGCAAGCATATTCTCATGTACATEST: gi|211291095|gb|FL438876.1|FL438876
genomic: ATACAAGTGCTGCTGCACAGTCGCCTTCTCATCCTCCTGGAAATGCATTGgtttgttcga ... ttttttccagATCAAAGCCAACCTTGACATTGTGCCCCAGCAAGCATATTCTCATGTACAT
EST: ATACAAGTGCTGCTGCACAGTCGCCTTCTCATCCTCCTGGAAATGCATTG ATCAAAGCCAACCTTGACATTGTGCCCCAGCAAGCATATTCTCATGTACATEST: gi|19058176|gb|BM736843.1|BM736843
genomic: ATACAAGTGCTGCTGCACAGTCGCCTTCTCATCCTCCTGGAAATGCATTGgtttgttcga ... ttttttccagATCAAAGCCAACCTTGACATTGTGCCCCAGCAAGCATATTCTCATGTACAT
EST: ATACAAGTGCTGCTGCACAGTCGCCTTCTCATCCTCCTGGAAATGCATTG ATCAAAGCCAACCTTGACATTGTGCCCCAGCAAGCATATTCTCATGTACATEST: gi|32930925|gb|CF035737.1|CF035737
genomic: ATACAAGTGCTGCTGCACAGTCGCCTTCTCATCCTCCTGGAAATGCATTGgtttgttcga ... ttttttccagATCAAAGCCAACCTTGACATTGTGCCCCAGCAAGCATATTCTCATGTACAT
EST: ATACAAGTGCTGCTGCACAGTCGCCTTCTCATCCTCCTGGAAATGCATTG ATCAAAGCCAACCTTGACATTGTGCCCCAGCAAGCATATTCTCATGTA
genomic: ATACAAGTGCTGCTGCACAGTCGCCTTCTCATCCTCCTGGAAATGCATTGgtttgttcga ... ttttttccagATCAAAGCCAACCTTGACATTGTGCCCCAGCAAGCATATTCTCATGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGGAATCACAATACCAGATTACTCCTTGGCATGCTGAATCTTCAAATAATACAAGTGCTGCTGCACAGTCGCCTTCTCATCCTCCTGGAAATGCATTGgtttgttcgatatggcacaatgcttttcatcacatgtttctcggaattcatgcatgattgtagattctaactcccatcacttttttttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC