1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GATGACAACAGGTATAACTCTAGCCGAGGTGCCCACCTGAATCTGAAGCGTGCAGAAAAAGCTCGTATTCTTGTTAACAAGATTCCAGgtatcagttcaaattataacatgatttccctttactttagctgcgaagaagtttgtgccttgcaaaacttattttatgtaaactgaacttgtatcttaatctgttaggtatgctttatgttccattgattgctgatgtaatgtcttctttcatcctag
species | Zea mays |
transcript | GRMZM2G101874_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GAATCTGAAGCGTGCAGAAAAAGCTCGTATTCTTGTTAACAAGATTCCAG CACTTGTTGAAACCCTGGTGTCGAAGACCACAGCATGGGAGGAGAACCGTGEST: gi|32943864|gb|CF048683.1|CF048683
genomic: GAATCTGAAGCGTGCAGAAAAAGCTCGTATTCTTGTTAACAAGATTCCAGgtatcagttc ... ttcatcctagCACTTGTTGAAACCCTGGTGTCGAAGACCACAGCATGGGAGGAGAACCGTG
EST: GAATCTGAAGCGTGCAGAAAAAGCTCGTATTCTTGTTAACAAGATTCCAG CACTTGTTGAAACCCTGGTGTCGAAGACCACAGCATGGGAGGAGAACCGTGEST: gi|32931247|gb|CF036059.1|CF036059
genomic: GAATCTGAAGCGTGCAGAAAAAGCTCGTATTCTTGTTAACAAGATTCCAGgtatcagttc ... ttcatcctagCACTTGTTGAAACCCTGGTGTCGAAGACCACAGCATGGGAGGAGAACCGTG
EST: GAATCTGAAGCGTGCAGAAAAAGCTCGTATTCTTGTTAACAAGATTCCAG CACTTGTTGAAACCCTGGTGTCGAAGACCACAGCATGGGAGGAGAACCGTGEST: gi|32850237|gb|CD989918.1|CD989918
genomic: GAATCTGAAGCGTGCAGAAAAAGCTCGTATTCTTGTTAACAAGATTCCAGgtatcagttc ... ttcatcctagCACTTGTTGAAACCCTGGTGTCGAAGACCACAGCATGGGAGGAGAACCGTG
EST: GAATCTGAAGCGTGCAGAAAAAGCTCGTATTCTTGTTAACAAGATTCCAG CACTTGTTGAAACCCTGGTGTCGAAGACCACAGCATGGGAGGAGAACCGTGEST: gi|32930682|gb|CF035494.1|CF035494
genomic: GAATCTGAAGCGTGCAGAAAAAGCTCGTATTCTTGTTAACAAGATTCCAGgtatcagttc ... ttcatcctagCACTTGTTGAAACCCTGGTGTCGAAGACCACAGCATGGGAGGAGAACCGTG
EST: GAATCTGAAGCGTGCAGAAAAAGCTCGTATTCTTGCTAACAAGATTCCAG CACTTGTTGAAACCCTGGTGTCGAAGACCACAGCATGGGAGGAGAACCGTG
genomic: GAATCTGAAGCGTGCAGAAAAAGCTCGTATTCTTGTTAACAAGATTCCAGgtatcagttc ... ttcatcctagCACTTGTTGAAACCCTGGTGTCGAAGACCACAGCATGGGAGGAGAACCGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGACAACAGGTATAACTCTAGCCGAGGTGCCCACCTGAATCTGAAGCGTGCAGAAAAAGCTCGTATTCTTGTTAACAAGATTCCAGgtatcagttcaaattataacatgatttccctttactttagctgcgaagaagtttgtgccttgcaaaacttattttatgtaaactgaacttgtatcttaatctgttaggtatgctttatgttccattgattgctgatgtaatgtcttctttcatcctag
- - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - TGAAGC