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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATCAAGCTTTACCGAGCATGTCCCTTATTGCTTCAGACTTCAGCTATCTTCCAGACGTTAGCATACCTGGTGACAGGGCTCCATTGGTTTCATCAAAGgtgagtgtcctggcagactgcgattttattaagcatgcaaagctttattttttttaactactacatttctccaactaggctgcgaaggctacttattatt...

Basic information

species Zea mays
transcript GRMZM2G101217_T05
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101217_T07 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os01g68390.1 (Oryza sativa), 5'ss of exon 10
ACATCAAGCTTTACCGAGCATGTCCCTTATTGCTTCAGACTTCAGCTATCTTCCAGACGTTAGCATACCTGGTGACAGGGCTCCATTGGTTTCATCAAAGgtg--agtgtcctggcagactgcgattttattaagcatgcaaagctttattttttttaactactacatt---tctccaactaggctgcgaaggctacttattatt
|||||||||||| || |||||||||||||| |||||||| |||||||||||||| || || || |||||||| || || |||||||||||||| |||||||||  |    | |  | ||||     |   ||   |   ||| ||   |||| | |     ||  | ||     |    |  |  |||                 
ACATCAAGCTTTGCCAAGCATGTCCCTTATAGCTTCAGATTTCAGCTATCTTCCTGATGTCAGTATACCTGGCGATAGAGCTCCATTGGTTTCTTCAAAGgtgacaagaccttcactgacttttggtgcgtttttccaacaaggca--atttctctaggacacctcgttgatgttgtgtcctgcttgcag---------------