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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCATTGGCACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACTGTTTCTGTgtaagtgcatcttcttgctgttacattcttcatgctgatattgttctttagctccatgtctaagagcatgctgaatctgtgcctgcaacacag

Basic information

species Zea mays
transcript GRMZM2G100484_T03
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G100484_T03 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os09g15170.1 (Oryza sativa), 5'ss of exon 10
GGCATTGGCACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACTGTTTCTGTgtaagtgcatcttcttgctgttacattcttcatgctgatattgttcttta-gctccatgtctaagagcatgctgaatctgt-gcctgcaacacag
|| || || ||| |||||||||| || ||||||||||| ||||| |||||||||||||||| |||||||||    |||||   |      || ||||  ||   |  || | |   | | ||| ||||  |  ||||| | |  ||  |  |||
GGAATCGGTACCTTACTAGATGGTCTATTTGGCACTGGTACTGGATCTACTGTTTCTGTgtgagtgcatct----gctgtacta------atactgagttttcaccctatgtttgctctgtaaaagcacccctaatcttttgggtgttattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9566278|gb|BE475787.1|BE475787
EST:     ACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACTGTTTCTGT                         TGAGAACGTTGGTCTC
genomic: ACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACTGTTTCTGTgtaagtgcat ... tgcaacacagTGAGAACGTTGGTCTC
EST: gi|22545627|gb|BU097986.1|BU097986
EST:     ACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACTGTTTCTGT                         TGAGAACGTTGGTCTCCTAGGATCAACGAGGGTTGGTAGCAGAAGAGTGAT
genomic: ACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACTGTTTCTGTgtaagtgcat ... tgcaacacagTGAGAACGTTGGTCTCCTAGGATCAACGAGGGTTGGTAGCAGAAGAGTGAT
EST: gi|26457048|gb|CA828631.1|CA828631
EST:     ACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACTGTTTCTGT                         TGAGAACGTTGGTCTCCTAGGATCAACGAGGGTTGGTAGCAGAAGAGTGAT
genomic: ACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACTGTTTCTGTgtaagtgcat ... tgcaacacagTGAGAACGTTGGTCTCCTAGGATCAACGAGGGTTGGTAGCAGAAGAGTGAT
EST: gi|211271038|gb|FL034395.1|FL034395
EST:     ACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACTGTTTCTGT                         TGAGAACGTTGGTCTCCTAGGATCAACGAGGGTTGGTAGCAGAAGAGTGAT
genomic: ACCCTACTAGATGGCCTGTTTGGCACTGGGACTGGTTCTACTGTTTCTGTgtaagtgcat ... tgcaacacagTGAGAACGTTGGTCTCCTAGGATCAACGAGGGTTGGTAGCAGAAGAGTGAT