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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAATTCTGCTAAATGAATGCAGCTTACAGCTTCTAGGATCAAAGCAGAAATGGAAAAGACTTTGCGTTGGCTTGTCCCTTTTGCTAGTAACACAAATAGgtaattaatctcacctgatcacctatgatctgatgatttacagccacagtgattatccatattgtacttcaaatgtgattacttgttcataccag

Basic information

species Zea mays
transcript GRMZM2G097502_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G097502_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os05g35530.1 (Oryza sativa), 5'ss of exon 11
ATAATTCTGCTAAATGAATGCAGCTTACAGCTTCTAGGATCAAAGCAGAAATGGAAAAGACTTTGCGTTGGCTTGTCCCTTTTGCTAGTAACACAAATAGgtaattaatctcacc--tgatcacctatgatctgatgatttacagccacagtgattatccatattgtacttcaaatgtgattacttgttcataccag
                       ||||||||||||   |||||||| |||||||| ||||||||||| |||||||||||| |||| | ||| ||||  | |||||  |||  | |  ||    ||| ||| || || | |||||    ||   | ||||||| |  ||||   ||| |||||   ||||||  ||||
-----------------------CTTACAGCTTCTCAAATCAAAGCTGAAATGGAGAAGACTTTGCGATGGCTTGTCCCTATTGCAAATAATACAACGAAgtaatatatcctatccttgcatgcctgtgacctcattacttacaattgcaaaaactatccatttcttactgagaatatgattgtctgttcaccccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211428447|gb|FL143038.1|FL143038
EST:     CTTTGCGTTGGCTTGTCCCTTTTGCTAGTAACACAAATAG                         GGCACACCATGGCTTCGGTTGGGTTGGAGAGTGGGCAAATACAGG
genomic: CTTTGCGTTGGCTTGTCCCTTTTGCTAGTAACACAAATAGgtaattaatc ... ttcataccagGGCACACCATGGCTTCGGTTGGGTTGGAGAGTGGGCAAATACAGG