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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAACATATGGATTTCTTGGAAGTTCAAGTGGGATGGGTGACTGGACCATGGTTCCTTTCTATTTTCGTCAATATGCTTCCATGGGAAAGTGgtcaggttttatacagtgtcttggttctttcattatgatatgtactattacaatatttttgctagtagttcactgctgtaagattggttaatccctttct...

Basic information

species Zea mays
transcript GRMZM2G095868_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095868_T03 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os03g17540.1 (Oryza sativa), 5'ss of exon 10
CCAAACATATGGATTTCTTGGAAGTTCAAGTGGGATGGGTGACTGGACCATGGTTCCTTTCTATTTTCGTCAATATGCTTCCATGGGAAAGTGgtcaggttttatacagtgtcttggttctttcattatgatatgtactattaca-atatttttgctagtagttcactg-ctgtaagattggttaatccctttct
| || |||||||||||| ||| |||||| |||| ||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||| || |  |||||| ||||||||| ||||| ||||  |||  |||  |||| |  | | |  | | |  | | ||||    |  | |    
CAAAGCATATGGATTTCCTGGGAGTTCAGGTGGCATGGGTGACTGGACCATGGTTTCTTTCAATTTTCATCAATATGCTTCCATGGGAAAGTGgtcaggttttatgcaatagcttggtgctttcattaagatatatactcatacttatacatttgatgttcggtaccagtcccttaaattgaacgaaacatgc--

upper sequence: GRMZM2G095868_T03 (Zea mays), 5'ss of exon 9
lower sequence: Vv08s0040g03050.t01 (Vitis vinifera), 5'ss of exon 9
CCAAACATATGGATTTCTTGGAAGTTCAAGTGGGATGGGTGACTGGACCATGGTTCCTTTCTATTTTCGTCAATATGCTTCCATGGGAAAGTGgtcaggttt----tatacagtgtcttggttctttcattatgatatgtactattacaatatttttgctagtagttcactgctgtaagattggttaatccctttct---------------------------------------
  |  ||| |||||| ||| | ||| || ||||  ||| |  ||||||| ||||| ||||| ||||| || |||||  ||||||||||||||||| ||||||    |||| | |       | | ||| | |   |   |    || |  || |||| ||  |   || ||    | |  |||   | |||   |                                         
TTAGTCATCTGGATTGCTTAGGAGTGCAGGTGGCCTGGATCTCTGGACCTTGGTTTCTTTCCATTTTTGTGAATATTATTCCATGGGAAAGTGgtgaggtttgcattatataatagagcaatacattc-tgaaactgaatgaatttcctttaatttttctt-tgcatctctagattcattttgaacactcctagttgtcaagcatattaaccttgtaatggttcctttaacctcag