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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTTGGGCTGGAATGAAAACCGTGCAGTACTTCGATGGGAGGACATACGAATGGGTTGGTTTGAGCCGCCAACCCAACATTATCAGTAAGgtatgttcattggatgtttaggcaaatgagctgttctgcggagcatgcagttgagatggatctgtttcccagttttggtggatgttcctctttgagggaa...

Basic information

species Zea mays
transcript GRMZM2G095757_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g02890.1 (Oryza sativa), 5'ss of exon 9
GTATTTGGGCTGGAATGAAAACCGTGCAGTACTTCGATGGGAGGACATACGAATGGGTTGGTTTGAGCCGCCAACCCAACATTATCAGTAAGgtatgttcattggatgtttaggcaaatga-gctgttctgcggagcatgcagttgagatggatctgtttcccagttttggtggatgttcctctttgagggaa-
||||||||||||||||||| || |||   ||||| |||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||| ||||| |||||  |||  ||||| | ||  | ||  |||||   || |   |  |  | | |     ||||||    ||| ||  ||| | | |  
GTATTTGGGCTGGAATGAAGACTGTGAGATACTTTGATGGGAGGACATATGAATGGGTTGGTTTGAGTCGTCAACCCAATATTATCAGTAAGgtatgctcattagatgtcaaggggaatgaagttgcccagcaaagcatatggtggcattatacttttctttt--ttttggcatctgtcccatttttatgcagt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71427288|gb|DR808338.1|DR808338
EST:     GGACATACGAATGGGTTGGTTTGAGCCGCCAACCCAACATTATCAGTAAG                         GTAAAAAGGATGCTGGGACAGTTCACACCAGCACAGTGGGACAAGGACGAG
genomic: GGACATACGAATGGGTTGGTTTGAGCCGCCAACCCAACATTATCAGTAAGgtatgttcat ... ttctccttagGTAAAAAGGATGCTGGGACAGTTCACACCAGCACAGTGGGACAAGGACGAG
EST: gi|71442511|gb|DR823561.1|DR823561
EST:     GGACATACGAATGGGTTGGTTTGAGCCGCCAACCCAACATTATCAGTAAG                         GTAAAAAGGATGCTGGGACAGTTCACACCAGCACAGTGGGACAAGGACGAG
genomic: GGACATACGAATGGGTTGGTTTGAGCCGCCAACCCAACATTATCAGTAAGgtatgttcat ... ttctccttagGTAAAAAGGATGCTGGGACAGTTCACACCAGCACAGTGGGACAAGGACGAG