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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCGGACATGCTGGAGGTGGGCAACGGGGGCATGACCAACAGCGAGTACGTCGTGCACTTCAGCCTCTGGGCGATCTCCAAGgtcagtgagactgcgtacacctgatgcctgcatcctggtagtggtacacagacagaacattttagtttctttttttgtctgaacttgtcctcgcccggccaatgaacgcgcag

Basic information

species Zea mays
transcript GRMZM2G095126_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095126_T03 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os10g35070.1 (Oryza sativa), 5'ss of exon 11
ATCCGGACATGCTGGAGGTGGGCAACGGGGGCATGACCAACAGCGAGTACGTCGTGCACTTCAGCCTCTGGGCGATCTCCAAGgt------cagtgagactgcgtacacctgatgcctgcatcctggtagtggtacacagacagaacattttagtttctttttttgtctgaacttgtcctcgcccggccaatgaacgcgcag
| ||||||||||||||||| ||||| || || |||||||||  ||||||| |||| || |||||||||||||| |||||||||||       | || ||| |    |   | |||   | || | | |  |  || | |    ||  |   |||| |             || || || |||                    
ACCCGGACATGCTGGAGGTTGGCAATGGCGGGATGACCAACGACGAGTACATCGTCCATTTCAGCCTCTGGGCCATCTCCAAGgtactaccaaatgtgacggatgtcggataatgatggtattc-gtttctactaaagatgacgatgaaaatagtgtaaagaaaaaaagaaagttatcatcggt------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71323535|gb|DR798428.1|DR798428
EST:     TGACCAACAGCGAGTACGTCGTGCACTTCAGCCTCTGGGCGATCTCCAAG                         GCGCCTCTCATCATCGGCTGCGACGTCAGGCACATGTCGCGGGAGACGTAC
genomic: TGACCAACAGCGAGTACGTCGTGCACTTCAGCCTCTGGGCGATCTCCAAGgtcagtgaga ... gaacgcgcagGCGCCTCTCATCATCGGCTGCGACGTCAGGCACATGTCGCGGGAGACGTAC
EST: gi|88753305|gb|DY537446.1|DY537446
EST:     GGCCCAACAGCGAGTACGTCGTGCACTTCAGCCTCTGGGCGATCTCCAAG                         GCGCCTCTCATCATCGGCTGCGACGTCAGGCACATGTCGCGGGAGACGTAC
genomic: TGACCAACAGCGAGTACGTCGTGCACTTCAGCCTCTGGGCGATCTCCAAGgtcagtgaga ... gaacgcgcagGCGCCTCTCATCATCGGCTGCGACGTCAGGCACATGTCGCGGGAGACGTAC
EST: gi|94473544|gb|EB702502.1|EB702502
EST:     TGACCAACAGCGAGTACGTCGTGCACTTCAGCCTCTGGGCGATCTCCAAG                         GCGCCTCTCATCATCGGCTGGGACGTCAGGCACATGTCGCGGGAGACGTAC
genomic: TGACCAACAGCGAGTACGTCGTGCACTTCAGCCTCTGGGCGATCTCCAAGgtcagtgaga ... gaacgcgcagGCGCCTCTCATCATCGGCTGCGACGTCAGGCACATGTCGCGGGAGACGTAC
EST: gi|148929477|gb|EC875592.2|EC875592
EST:     TGACCAACAGCGAGTACGTCGTGCACTTCAGCCTCTGGGCGATCTCCAAG                         GCGCCTCTCATCATCGGTTGCGACGTCAGGCACATGTCGCGGGAGAGGTAC
genomic: TGACCAACAGCGAGTACGTCGTGCACTTCAGCCTCTGGGCGATCTCCAAGgtcagtgaga ... gaacgcgcagGCGCCTCTCATCATCGGCTGCGACGTCAGGCACATGTCGCGGGAGACGTAC
EST: gi|5740192|gb|AI947882.1|AI947882
EST:     TGACCAACAGCGAGTCCTTCGTGCACTTCAGCCTCTGGGCGATCTCCAAG                         GCGCCTCTCATCATCGGCTGCGACGTCAGGCACATGTCCCGGGAGACGTAC
genomic: TGACCAACAGCGAGTACGTCGTGCACTTCAGCCTCTGGGCGATCTCCAAGgtcagtgaga ... gaacgcgcagGCGCCTCTCATCATCGGCTGCGACGTCAGGCACATGTCGCGGGAGACGTAC
EST: gi|149080680|gb|EE169738.2|EE169738
EST:     TGACCAACAGCGAGTACGTCGTGCACTTCAGCCTCTGGGCGATCTCCAAG                         GCGCCTCTCATCATCGGCTGCGACGTCAGGCACATGTCGCGGGAGACGTAC
genomic: TGACCAACAGCGAGTACGTCGTGCACTTCAGCCTCTGGGCGATCTCCAAGgtcagtgaga ... gaacgcgcagGCGCCTCTCATCATCGGCTGCGACGTCAGGCACATGTCGCGGGAGACGTAC
EST: gi|211321684|gb|FL295978.1|FL295978
EST:     TGACCAACAGCGAGTACGTCGTGCACTTCAGCCTCTGGGCGATCTCCAAG                         GCGCCTCTCATCATCGGCTGCGACGTCAGGCACATGTCGCGGGAGACGTAC
genomic: TGACCAACAGCGAGTACGTCGTGCACTTCAGCCTCTGGGCGATCTCCAAGgtcagtgaga ... gaacgcgcagGCGCCTCTCATCATCGGCTGCGACGTCAGGCACATGTCGCGGGAGACGTAC
EST: gi|71767715|gb|DR965652.1|DR965652
EST:     TGACCAACAGCGAGTACGTCGTGCACTTCAGCCTCTGGGCGATCTCCAAG                         GCGCCTCTCATCATCGGCTGCGACGTCAGGCACATGTCGCGGGAGACGTAC
genomic: TGACCAACAGCGAGTACGTCGTGCACTTCAGCCTCTGGGCGATCTCCAAGgtcagtgaga ... gaacgcgcagGCGCCTCTCATCATCGGCTGCGACGTCAGGCACATGTCGCGGGAGACGTAC