Sequence
atgc intronic sequence ATGC exonic sequenceGAGTGCCCTCTGGGGAAAGCTAGCAGCAGAAATCCTAATGCAGAACTGGGACCTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAGgttctaacttcaatgttttgttctgtgttctttgttctttgtgtacactatatcaccaatcatgttccttcctgatctttgggtagaacttctcatcacc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G094083_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA02G33770.1 (Glycine max), 5'ss of exon 3
GAGTGCCCTCTGGGGAAAGCTAGCAGCAGAAATCCTAATGCAGAACTGGGACCTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAGgttctaact-tcaatgttttgttctgtgt------tctttgttctttgtgtacactatatcaccaatc---atgttccttcctgatctttgggtagaacttctcatcacc---------------------
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GAGTGCATTGTGGGGGAAGCTGGCAGCTGAAATTTTGATGCAGAACTGGGACATTGCTCTTGAAGAGCTCAATCGCTTGAAGGAAATCATTGATTCAAAGgttgttcttgtttgtcagttgatctttggagtagatgcatgttcttgtttgtcagttgatctttggagtagatgcatgttcttgtttgttatgcttaatatattaatatagactggtgaacttcgttgcag
upper sequence: GRMZM2G094083_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA10G16090.1 (Glycine max), 5'ss of exon 3
GAGTGCCCTCTGGGGAAAGCTAGCAGCAGAAATCCTAATGCAGAACTGGGACCTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAGgttctaact-tcaatgttttgttctgtgttctttgttctttgtgtacactatatcaccaatcatgttccttcctgatctttgggtagaacttctcatcacc
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GAGTGCATTGTGGGGGAAGCTGGCAGCTGAAATTTTGATGCAGAACTGGGACATCGCTCTTGAAGAGCTCAACCGCTTGAAGGAAATCATTGACTCAAAGgttgttcttgtttgtcagttggtctttggagtagatgcatgttcttgtttgttgtgcttaaaatatttaatatagactggtgg--tgaactttgttgcag-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78083360|gb|DV511753.1|DV511753EST: ACCTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAG GTACTTGAATGCTATACAGACAAATGCACACCATCTTATTAGGTATCTAGC
genomic: ACCTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAGgttctaactt ... tctcttgcagGTACTTGAATGCTATACAGACAAATGCACACCATCTTATTAGGTATCTAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGTGCCCTCTGGGGAAAGCTAGCAGCAGAAATCCTAATGCAGAACTGGGACCTAGCTTTGGAGGAACTCAACCGCTTGAAGGAAATAATTGATTCAAAGgttctaacttcaatgttttgttctgtgttctttgttctttgtgtacactatatcaccaatcatgttccttcctgatctttgggtagaacttctcatcacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA