1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGAAGAACAAGACAACTTTACTATTGATCCATCATCCTTGCCTGATGCATTAGATCTTCTAGCAACATCAGACAATAGAATACGCCTACTCGTTGCTGAGgtaaacttgaaatgttatggtaaattaatactccctccgtcccaatttataattcttttgactttttttaatcaagtttgactggcttgtcttattcaat...
species | Zea mays |
transcript | GRMZM2G093065_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TAGATCTTCTAGCAACATCAGACAATAGAATACGCCTACTCGTTGCTGAG GCTCAACTTCTAGCACGAGATGATGAACAAGGCTCTTCTGATGGTGGCGACEST: gi|60395437|gb|DN228307.1|DN228307
genomic: TAGATCTTCTAGCAACATCAGACAATAGAATACGCCTACTCGTTGCTGAGgtaaacttga ... ccctctccagGCTCAACTTCTAGCACGAGATGATGAACAAGGCTCTTCTGATGGTGGCGAC
EST: TAGATCTTCTAGCAACATCAGACAATAGAATACGCCTACTCGTTGCTGAG GCTCAACTTCTAGCACGAGATGATGAACAAGGCTCTTCTGATGGTGGCGACEST: gi|110207810|gb|EC889707.1|EC889707
genomic: TAGATCTTCTAGCAACATCAGACAATAGAATACGCCTACTCGTTGCTGAGgtaaacttga ... ccctctccagGCTCAACTTCTAGCACGAGATGATGAACAAGGCTCTTCTGATGGTGGCGAC
EST: TAGATCTTCTAGCAACATCAGACAATAGAATACGCTTACTCGTTGCTGAG GCTCAACTTCTAGCACGAGATGATGAACAAGGCTCTTTTGATGGTGGGGACEST: gi|211241304|gb|FL421834.1|FL421834
genomic: TAGATCTTCTAGCAACATCAGACAATAGAATACGCCTACTCGTTGCTGAGgtaaacttga ... ccctctccagGCTCAACTTCTAGCACGAGATGATGAACAAGGCTCTTCTGATGGTGGCGAC
EST: TAGATCTTCTAGCAACATCAGACAATAGAATACGCCTACTCGTTGCTGAG GCTCAACTTCTAGCACGAGATGATGAACAAGGCTCTTCTGATGGTGGCGACEST: gi|71774030|gb|DR971916.1|DR971916
genomic: TAGATCTTCTAGCAACATCAGACAATAGAATACGCCTACTCGTTGCTGAGgtaaacttga ... ccctctccagGCTCAACTTCTAGCACGAGATGATGAACAAGGCTCTTCTGATGGTGGCGAC
EST: TAGATTTTTTAGCAACATCAGACAATAGAATACGCCTACTCGTTGCTGAG GCTCAACTTTTAGCACGAGATGATGAACAAGGCTCTTTTGATGGTGGCGACEST: gi|71316281|gb|DR794821.1|DR794821
genomic: TAGATCTTCTAGCAACATCAGACAATAGAATACGCCTACTCGTTGCTGAGgtaaacttga ... ccctctccagGCTCAACTTCTAGCACGAGATGATGAACAAGGCTCTTCTGATGGTGGCGAC
EST: TAGATCTTCTAGCAACATCAGACAATAGAATACGCCTACTCGTTGCTGAG GCTCAACTTCTAGCACGAGATGATGAACAAGGCTCTTCTGATGGTGGCGAC
genomic: TAGATCTTCTAGCAACATCAGACAATAGAATACGCCTACTCGTTGCTGAGgtaaacttga ... ccctctccagGCTCAACTTCTAGCACGAGATGATGAACAAGGCTCTTCTGATGGTGGCGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAGAACAAGACAACTTTACTATTGATCCATCATCCTTGCCTGATGCATTAGATCTTCTAGCAACATCAGACAATAGAATACGCCTACTCGTTGCTGAGgtaaacttgaaatgttatggtaaattaatactccctccgtcccaatttataattcttttgactttttttaatcaagtttgactggcttgtcttattcaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgtccc