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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACATCCTTCAATGGGAGTCCAAGCACATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAAgtaatgttcagggttttgtactctgccttgtactactgttagtgaatgccttgtaattagtgttgttgtttatgcag

Basic information

species Zea mays
transcript GRMZM2G092776_T07
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092776_T03 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os03g02170.2 (Oryza sativa), 5'ss of exon 8
GTACATCCTTCAATGGGAGTCCAAGCACATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAAgtaatgttcagggttttgtactctgccttgtactactgttagtgaatgccttgtaattagtgttgttgtttatg---cag
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    ||||||       || | ||| ||| | ||  ||  | |  |||||     |||| ||||||   |||
GTACATCCTTCAATGGGAGTCTAAGCATATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAAgtaatatttgtagttttgc------ccatttac-actatcagcaaaaacttc-taatttacactgttatttatgattcag

upper sequence: GRMZM2G092776_T03 (Zea mays), 5'ss of exon 10
lower sequence: AT2G18100.1 (Arabidopsis thaliana), 5'ss of exon 8
GTACATCCTTCAATGGGAGTCCAAGCACATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAAgtaatgtt-cagggttttgtactctgcct-------tgta---cta-ctgttagtgaatgccttgtaattag-tgttgttgtttatgcag-----------
|||||   | |||||||| ||| || | || ||||||||||| || ||||| ||||||||||| || |||||||||  |  |  ||||| | |  | | |       ||||   ||| || || |  | |||  |   | ||| |  |    || |                
GTACACGGTGCAATGGGAATCCGAGAATATTATTGCAGTGAGCACTGCAATTCAGGATTGGCTTACTTCAAgtaataatatatagttttatccaatacgtgtaaccatgtaaatctatctttttgctattgctctaagaatagatagtaacattgacatgaacttgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110536646|gb|EE040761.1|EE040761
EST:     AAGCACATAATTTGCAGTGAGTACAGCAATCCAGGATTGGCTGGCTTCAA                         GGCTTGCAATGGAATTGA-GAAACAAAGGTGCTATGAGAACTGTTTTAAGT
genomic: AAGCACATAA-TTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAAgtaatgttca ... gtttatgcagGGCTTGCAATGGAATTGATGAAAC-AAGGTGCTATGAGAACTGTCTTAAGT
EST: gi|67020360|gb|CO449109.1|CO449109
EST:     CAAGCACATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAA                         GGCTTGCAATGGAATTGATGAAACAAGGTGCTATGAGAACTGTCTTAAGTG
genomic: CAAGCACATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAAgtaatgttca ... gtttatgcagGGCTTGCAATGGAATTGATGAAACAAGGTGCTATGAGAACTGTCTTAAGTG
EST: gi|74233198|gb|DT641112.1|DT641112
EST:     CAAGCACATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAA                         GGCTTGCAATGGAATTGATGAAACAAGGTGCTATGAGAACTGTCTTAAGTG
genomic: CAAGCACATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAAgtaatgttca ... gtttatgcagGGCTTGCAATGGAATTGATGAAACAAGGTGCTATGAGAACTGTCTTAAGTG