Sequence
atgc intronic sequence ATGC exonic sequenceTTGAGAACATAAATGAGGTTTGGAAAGTTTTGCAAACTGGAAGCAATGCAAGGGCTGTTGGTTCAAACAATGTTAATGAGCACAGCAGTCGCTCCCACTGgttggacactgttttcatataatatccttttttattcgttggctgattgcttgatgtccaaatggttcttcttttaatctttattataacttttcttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G092232_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os03g02290.2 (Oryza sativa), 5'ss of exon 3
TTGAGAACATAAATGAGGTTTGGAAAGTTTTGCAAACTGGAAGCAATGCAAGGGCTGTTGGTTCAAACAATGTTAATGAGCACAGCAGTCGCTCCCACTGgttggacactgttttcatataatatccttttttattcgttggctgattgcttgatgtccaaatggttcttctttta-atctttattataacttttcttcag
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TTGAGAACATCAAGGAGGTTTGGGATGTCTTGCAAGCTGGAAGCAATGCAAGGGCTGTAGGATCAAACAATGTGAATGAGCACAGCAGTCGCTCCCACTGgttggtcaaaattttattat--tattcttttcttttc-tagagtacttgcttctggtcaaaatgttttgacctttatatctgtacctcag-----------
upper sequence: GRMZM2G092232_T01 (Zea mays), 5'ss of exon 9
lower sequence: Vv18s0001g07800.t01 (Vitis vinifera), 5'ss of exon 9
TTGAGAACATAAATGAGGTTTGGAAAGTTTTGCAAACTGGAAGCAATGCAAGGGCTGTTGGTTCAAACAATGTTAATGAGCACAGCAGTCGCTCCCACTGgttggacactgttttcatataatatcctttt-ttattcgttggctgattgcttgatgtccaaatggttcttcttttaatctttattataacttttcttcag
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TTGAGAACATTAAGGAGGTCTGGGATGTTCTGCAAGCTGGAAGCAATGGAAGGGCTGTAGGATCAAACAATGTGAATGAACACAGTAGCCGATCCCACTGgttatcatcagcctcagcaaatcattattttcttatgagtcaatctaatctttaatttcattattgttaaatctgatctgtttctttgaacaataaggac-
upper sequence: GRMZM2G092232_T01 (Zea mays), 5'ss of exon 9
lower sequence: Vv00s0218g00050.t01 (Vitis vinifera), 5'ss of exon 11
TTGAGAACATAAATGAGGTTTGGAAAGTTTTGCAAACTGGAAGCAATGCAAGGGCTGTTGGTTCAAACAATGTTAATGAGCACAGCAGTCGCTCCCACTGgttggacactgttttcatataatatccttttttattcgttggctgattgcttgatgtccaaatggttcttcttttaatctttattataacttttcttcag
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TGGAGAACATTAAAGAAGTCTGGAAAGTCCTGCAGGCTGGAAGCAATGCTAGGGCAGTTGGATCCAATAACGTGAATGAGCACAGCAGCCGATCACACTGgt---attcaacttcccaaaagctttctcttt--tctgtttccttatt-catcatattttgataagttgtgaataaaatttcaccaa---ttttgttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6021156|gb|AW066084.1|AW066084EST: GGCTGGTGGTTCAAACAATGGTAATGAGCACAGNNCAGNCGCTCCCACTG CATGCTATGCATCACG
genomic: GGCTGTTGGTTCAAACAATGTTAATGAGCACAG--CAGTCGCTCCCACTGgttggacact ... ttttcttcagCATGCTATGCATCACG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGAGAACATAAATGAGGTTTGGAAAGTTTTGCAAACTGGAAGCAATGCAAGGGCTGTTGGTTCAAACAATGTTAATGAGCACAGCAGTCGCTCCCACTGgttggacactgttttcatataatatccttttttattcgttggctgattgcttgatgtccaaatggttcttcttttaatctttattataacttttcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT