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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTAATGTTGCTGTTCGGAAGGAGCTGCACAAACCAGCTTCAGATCGCTCTTGTATCCATCTCGAGTTTGACATTTCTGGCACTGGTCTTGTgtaagtttcctgatgtatatattctttttcctcttatattcctttatttcagtcttgatcctatctatgttccactggtttccctgtgaaaaggatgtta...

Basic information

species Zea mays
transcript GRMZM2G086489_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G086489_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os04g55960.1 (Oryza sativa), 5'ss of exon 9
GTCTAATGTTGCTGTTCGGAAGGAGCTGCACAAACCAGCTTCAGATCGCTCTTGTATCCATCTCGAGTTTGACATTTCTGGCACTGGTCTTGTgtaagtttcctgatgtatatattctttttcctcttatattcctttatttcagtcttgat-cctatct----------atgttccactggtttccctgtgaaaaggatgtta-------------------------------------
|||||||||||||||||| ||||| || || || |||||||||||||||||||| || ||||| ||||| || || || |||||||||||||||||||||   || | |    |  ||      | |||| |    |  | | ||| ||||    ||| |          |||   ||  | |   |||   |   | || |||                                     
GTCTAATGTTGCTGTTCGAAAGGAACTCCATAAGCCAGCTTCAGATCGCTCTTGCATTCATCTGGAGTTCGATATCTCAGGCACTGGTCTTGTgtaagttctttggtatcctaaaactgacattttttatgtcttctcgtgt-agttttgacatttatgtgtgaagtcaaatgactcaacgatgatccttcaatttgtattttattgataacaacttatatttctaagaactttgtatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21809491|gb|BQ667809.1|BQ667809
EST:     GATCGCTCTTGTATCCATCTCGAGTTTGACATTTCTGGCACTGGTCTTGT                         GTATGAAACCGGAGACCATGTTGGTGTATATGCAGAAAATTCTGTTCAGAC
genomic: GATCGCTCTTGTATCCATCTCGAGTTTGACATTTCTGGCACTGGTCTTGTgtaagtttcc ... tttgtttcagGTATGAAACCGGAGACCATGTTGGTGTATATGCAGAAAATTCTGTTCAGAC
EST: gi|40334433|gb|CK368503.1|CK368503
EST:     TCGAGTTTGACATTTCTGGCACTGGTCTTGT                         GTATGAAACCGGAGACCATGTTGGTGTATATGCAGAAAATTCTGTTCAGAC
genomic: TCGAGTTTGACATTTCTGGCACTGGTCTTGTgtaagtttcc ... tttgtttcagGTATGAAACCGGAGACCATGTTGGTGTATATGCAGAAAATTCTGTTCAGAC
EST: gi|32848491|gb|CD988172.1|CD988172
EST:     GATCGCTCTTGTATCCATCTCGAGTTTGACATTTCTGGCACTGGTCTTGT                         GTATGAAACCGGAGACCATGTTGGTGTATATGCAGAAAATTCTGTTCAGAC
genomic: GATCGCTCTTGTATCCATCTCGAGTTTGACATTTCTGGCACTGGTCTTGTgtaagtttcc ... tttgtttcagGTATGAAACCGGAGACCATGTTGGTGTATATGCAGAAAATTCTGTTCAGAC