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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCATCCGCCACCTGTTCGGCAAATGCCTGGGACAATATGAAAAGCTAAGGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCAgtaagaacatttttcagcaagttttaaattttctagttcatttatttgaatagtttagtgtacatgcatattttgctgtttacatagttggctgtttggt...

Basic information

species Zea mays
transcript GRMZM2G085970_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G085970_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g06450.2 (Oryza sativa), 5'ss of exon 9
GAGCATCCGCCACCTGTTCGGCAAATGCCTGGGACAATATGAAAAGCTAAGGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCAgtaagaacattt-ttcagcaagttttaaattttctagttcatttatttgaatagtttagtgtacatgcatattttgctgtttacatagttggctgtttggt-------
 || ||||| ||| | ||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || || |||||||||||||  |||||||  | | |||    | ||| |     || | ||   |||  ||| || |||     | ||    | |||   ||| |  ||| |   | |   ||       
TAGTATCCGTCACTTATTCAGCAAATGCCTGGGACAGTATGAAAAGCTAAGGAAAAAGCAAGCTTTTCTTGACAACTACAGAAAGTTCCCAATGTTTGAGgtaagaaactctattccttcaatttca-----tccattttcattacctgagtaatttc---caaatttgaagtttctggttaaactaggtatgtttgaagtgctacaa

upper sequence: GRMZM2G085970_T02 (Zea mays), 5'ss of exon 1
lower sequence: Vv15s0046g01350.t01 (Vitis vinifera), 5'ss of exon 9
GAGCATCCGCCACCTGTTCGGCAAATGCCTGGGACAATATGAAAAGCTAAGGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCAgtaagaacatttttcagcaagttttaaattttctagttcatt--tatttgaatagtttagtgtacatgcatattttgctgtttacatagttggctgtttggt
 || ||||| ||||| ||| ||||||||||| | || || || ||| | || || ||||| || |||||||||||||||||||| |||||||||||||| |||||      |   | | | | | | | || ||  |  | |    ||||   | |||    ||    | ||| ||  |  |||  |   |   | | |   
AAGTATCCGACACCTATTCAGCAAATGCCTGAGCCAGTACGAGAAGTTGAGAAAGAAGCAAGCCTTTCTTGACAACTATAGGAAGTTCCCAATGTTTGCTgtaagtttccatcctaactactataatagttgcttttcaactatcttttgccaaatttctgctatccacctatgttattcattaattccatttatttcta--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211101013|gb|FL440822.1|FL440822
EST:     GGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCA                         GATAATGATCTCTCTGAATTTGATGAATCTCGAGAGATAATAGAGAGCCTA
genomic: GGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCAgtaagaacat ... cttcgtgcagGATAATGATCTCTCTGAATTTGATGAATCTCGAGAGATAATAGAGAGCCTA
EST: gi|50330999|gb|CO526125.1|CO526125
EST:     GGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCA                         GATAATGATCTCTCTGAATTTGATGAATCTCGAGAGATAATAGAGAGCCTA
genomic: GGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCAgtaagaacat ... cttcgtgcagGATAATGATCTCTCTGAATTTGATGAATCTCGAGAGATAATAGAGAGCCTA
EST: gi|37389993|gb|CF632221.1|CF632221
EST:     GGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCA                         GATAATGATCTCTCTGAATTTGATGAATCTCGAGAGATAATAGAGAGCCTA
genomic: GGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCAgtaagaacat ... cttcgtgcagGATAATGATCTCTCTGAATTTGATGAATCTCGAGAGATAATAGAGAGCCTA
EST: gi|22819393|gb|BU499483.1|BU499483
EST:     GGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCA                         GATAATGATCTCTCTGAATTT
genomic: GGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCAgtaagaacat ... cttcgtgcagGATAATGATCTCTCTGAATTT
EST: gi|12971802|gb|BG267665.1|BG267665
EST:     GGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCA                         GATAATGATCTCTCTGAATTTGATGAATCTCGAGAGATAATAGAGAGCCTA
genomic: GGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCAgtaagaacat ... cttcgtgcagGATAATGATCTCTCTGAATTTGATGAATCTCGAGAGATAATAGAGAGCCTA
EST: gi|32933127|gb|CF037939.1|CF037939
EST:     GGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTATGCA                         GATAATGATCTCTCTGAATTTGATGAATCTCGAGAGATAATAGAGAGCCTA
genomic: GGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCAgtaagaacat ... cttcgtgcagGATAATGATCTCTCTGAATTTGATGAATCTCGAGAGATAATAGAGAGCCTA
EST: gi|211056566|gb|FL481088.1|FL481088
EST:     AGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCA                         GATAATGATCTCTCTGAATTTGATGAATCTCGAGAGATAATAGAGAGCCTA
genomic: GGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCAgtaagaacat ... cttcgtgcagGATAATGATCTCTCTGAATTTGATGAATCTCGAGAGATAATAGAGAGCCTA
EST: gi|93014105|gb|EB639625.1|EB639625
EST:     GGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCA                         GATAATGATCTCTCTGAATTTGATGAATCTCGAGAGATAATAGAGAGCCTA
genomic: GGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCAgtaagaacat ... cttcgtgcagGATAATGATCTCTCTGAATTTGATGAATCTCGAGAGATAATAGAGAGCCTA
EST: gi|4647086|gb|AI622161.1|AI622161
EST:     GGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCA                         GATAATGATCTCTCTGAATTTGATGAATCTCGAGAGATAATAGAGAGCCTA
genomic: GGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCAgtaagaacat ... cttcgtgcagGATAATGATCTCTCTGAATTTGATGAATCTCGAGAGATAATAGAGAGCCTA
EST: gi|22542648|gb|BU093086.1|BU093086
EST:     GGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCA                         GATAATGATCTCTCTGAATTTGATGAATCTCGAGAGATAATAGAGAGCCTA
genomic: GGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCAgtaagaacat ... cttcgtgcagGATAATGATCTCTCTGAATTTGATGAATCTCGAGAGATAATAGAGAGCCTA
EST: gi|5762141|gb|AI967189.1|AI967189
EST:     GGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCA                         GATAATGATCTCTCTGAATTTGATGAATCTCGAGAGATAATAGAGAGCCTA
genomic: GGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCAgtaagaacat ... cttcgtgcagGATAATGATCTCTCTGAATTTGATGAATCTCGAGAGATAATAGAGAGCCTA
EST: gi|76020288|gb|DT947458.1|DT947458
EST:     GGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCA                         GATAATGATCTTTTTGAATTTGATGAATCTCGAGAGATAATAGAGAGCCTA
genomic: GGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCAgtaagaacat ... cttcgtgcagGATAATGATCTCTCTGAATTTGATGAATCTCGAGAGATAATAGAGAGCCTA
EST: gi|22935439|gb|BU571714.1|BU571714
EST:     GGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCA                         GATAATGATCTCTCTGAATTTGATGAATCTCGAGAGATAATAGAGAGCCTA
genomic: GGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCAgtaagaacat ... cttcgtgcagGATAATGATCTCTCTGAATTTGATGAATCTCGAGAGATAATAGAGAGCCTA
EST: gi|83278659|gb|DV942667.1|DV942667
EST:     GGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCA                         GATAATGATCTCTCTGAATTTGATGAATCTCGAGAGATAATAGAGAGCCTA
genomic: GGAAAAAGCAGGCTTTTCTTGACAACTATAGGAAATTCCCAATGTTTGCAgtaagaacat ... cttcgtgcagGATAATGATCTCTCTGAATTTGATGAATCTCGAGAGATAATAGAGAGCCTA