Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAGGTGTGCTTAGCATGGCTAAACAGGCAATGTTAAGGATGCCTGGGATCCACAGAACCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGATgtaagccaactttagacaaacaaacaaaaaaatcctgctttttactctaaataaatgtcatttttatgtcaatctgaatggcaaaggctgataaattgtgcgctcctgttgtgctgtacttgtag

Basic information

species Zea mays
transcript GRMZM2G085747_T04
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G085747_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os10g35960.2 (Oryza sativa), 5'ss of exon 10
GATAGGTGTGCTTAGCATGGCTAAACAGGCAATGTTAAGGATGCCTGGGATCCACAGAACCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGATgtaagccaactttagacaaacaaacaaaaaaatcctgctttttactctaaataaa-tgtcatttttatgtcaatctgaatggcaaaggctgataaattgtgcgctcctgttgtgctgt-acttgtag----------------------------------------
||||||||||||||  |||||||||||||| ||| |||||||||| |||||  |||| | |||||||||||||||||||||||||||||||||||||||||||||| |  ||||  |||  ||| |  ||  | ||  |||  | | || ||    || |||   | |||  |  || |   |   |||       || |    ||||||| |    | | |  |||                                        
GATAGGTGTGCTTAATATGGCTAAACAGGCGATGCTAAGGATGCCAGGGATAAACAGGAGCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGATgtaagcta-ttttatgcaagaaaatatcaac-ttctcttttccaatatatatcttctgccatacatgtgttcaattgcaattctggggcaagct--ttataaagtcctgtttttacatgaataataggtttgcttcttattttccactgttatgctgtaccatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74232917|gb|DT640831.1|DT640831
EST:     TCCACAGAACCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGAT                         GGCCTTATTACGAAAGCTAGGAAGGACCTGGATTCTGCAGTGGCGCGTTTT
genomic: TCCACAGAACCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGATgtaagccaac ... gtacttgtagGGCCTTATTACGAAAGCTAGGAAGGACCTGGATTCTGCAGTGGCGCGTTTT
EST: gi|32850587|gb|CD990268.1|CD990268
EST:     TCCACAGAACCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGAT                         GGCCTTATTACGAAAGCTAGGAAGGACCTGGATTCTGCAGTGGCGCGTTTT
genomic: TCCACAGAACCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGATgtaagccaac ... gtacttgtagGGCCTTATTACGAAAGCTAGGAAGGACCTGGATTCTGCAGTGGCGCGTTTT
EST: gi|26456270|gb|CA827853.1|CA827853
EST:     TCCACAGAACCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGAT                         GGCCTTATTACGAAAGCTAGGAAGGACCTGGATTCTGCAGTGGCGCGTTTT
genomic: TCCACAGAACCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGATgtaagccaac ... gtacttgtagGGCCTTATTACGAAAGCTAGGAAGGACCTGGATTCTGCAGTGGCGCGTTTT
EST: gi|67010755|gb|CO439504.1|CO439504
EST:     TCCACAGAACCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGAT                         GGCCTTATTACGAAAGCTAGGAAGGACCTGGATTCTGCAGTGGCGCGTTTT
genomic: TCCACAGAACCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGATgtaagccaac ... gtacttgtagGGCCTTATTACGAAAGCTAGGAAGGACCTGGATTCTGCAGTGGCGCGTTTT