1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CGAGTTTGATGAGAGTGGAAAAGCGTATGGAGTCACTTCTGAAGGGGAGACCGCCAAGTGCAAGAAGATCGTCTGCGATCCTTCGTATTTGCCAGACAAGgtatataatatatatatatatatatatatatatatacgtagagagatcgaataatcggccccggccggccggtgatcgagacacttagcttgaacatggcttggtcgatcgatgagcag
species | Zea mays |
transcript | GRMZM2G084440_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AAGAAGATCGTCTGCGATCCTTCGTATTTGCCGGACAAG GTGAAGAAGGTTGGAAGGGTGGCCCGCGCGATATGCATCATGAAGCATCCGEST: gi|6994060|gb|AW453274.1|AW453274
genomic: AAGAAGATCGTCTGCGATCCTTCGTATTTGCCAGACAAGgtatataata ... cgatgagcagGTGAAGAAGGTTGGAAGGGTGGCCCGCGCGATATGCATCATGAAGCATCCG
EST: CGCCAAGTGCAANGAAGATCGTCTGCGATCCTTCGTATTTGCCAGACAAG GTGAAGAAGGTTGGAAGGGTGGCCCGCGCGATATGCATCATGAAGCATCCT
genomic: CGCCAAGTGCAA-GAAGATCGTCTGCGATCCTTCGTATTTGCCAGACAAGgtatataata ... cgatgagcagGTGAAGAAGGTTGGAAGGGTGGCCCGCGCGATATGCATCATGAAGCATCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGTTTGATGAGAGTGGAAAAGCGTATGGAGTCACTTCTGAAGGGGAGACCGCCAAGTGCAAGAAGATCGTCTGCGATCCTTCGTATTTGCCAGACAAGgtatataatatatatatatatatatatatatatatacgtagagagatcgaataatcggccccggccggccggtgatcgagacacttagcttgaacatggcttggtcgatcgatgagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG