1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGGCTTGCAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAGgtaaaaacaaaatctgcaatcccgtaattcatttgaaagaggatggaggcaacagagcacaaccttgctataggttcaactatggctgacattctgaactgacattag
species | Zea mays |
transcript | GRMZM2G083716_T05 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAG GTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATTEST: gi|78080917|gb|DV509329.1|DV509329
genomic: CAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAGgtaaaaacaa ... ctgacattagGTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATT
EST: CAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAG GTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATTEST: gi|148983128|gb|EE029059.2|EE029059
genomic: CAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAGgtaaaaacaa ... ctgacattagGTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATT
EST: CAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAG GTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATTEST: gi|149099157|gb|EE185182.2|EE185182
genomic: CAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAGgtaaaaacaa ... ctgacattagGTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATT
EST: CAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAG GTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATTEST: gi|5069818|gb|AI737783.1|AI737783
genomic: CAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAGgtaaaaacaa ... ctgacattagGTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATT
EST: GACGAGCAGAAG GTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATTEST: gi|60342862|gb|DN209835.1|DN209835
genomic: GACGAGCAGAAGgtaaaaacaa ... ctgacattagGTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATT
EST: CAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAG GTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATTEST: gi|60395675|gb|DN228545.1|DN228545
genomic: CAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAGgtaaaaacaa ... ctgacattagGTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATT
EST: CAAGGATACACTGGAGAACGACGAGCAGAAG GTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATTEST: gi|211360073|gb|FL471663.1|FL471663
genomic: CAAGGATACACTGGAGAACGACGAGCAGAAGgtaaaaacaa ... ctgacattagGTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATT
EST: CAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAG GTTGGAGCTGAAATAGTGAGGAGGGCCCTGAGCTACCCACTTAATTTGATTEST: gi|211268071|gb|FL357474.1|FL357474
genomic: CAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAGgtaaaaacaa ... ctgacattagGTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATT
EST: CAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAG GTTGGAGCTGAAATAGTGAGGAGGGCCCTGAGCTACCCACTTAATTTGATTEST: gi|6601638|gb|AW256034.1|AW256034
genomic: CAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAGgtaaaaacaa ... ctgacattagGTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATT
EST: CCATCAAGGAT-C-CTGGAG-ACGACGAGCAGAAG GTTGGAGCTGAAATAGTGAGGAGGGCCCTGAGCTACCCACTTAAATTGATTEST: gi|60355768|gb|DN222741.1|DN222741
genomic: CCATCAAGGATACACTGGAGAACGACGAGCAGAAGgtaaaaacaa ... ctgacattagGTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATT
EST: CAAGGATACACTGGAGAACGACGAGCAGAAG GTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATTEST: gi|5761879|gb|AI966852.1|AI966852
genomic: CAAGGATACACTGGAGAACGACGAGCAGAAGgtaaaaacaa ... ctgacattagGTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATT
EST: CAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAG GTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCCCTTAAATTGATTEST: gi|211500916|gb|FL458285.1|FL458285
genomic: CAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAGgtaaaaacaa ... ctgacattagGTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATT
EST: CAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAG GTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATTEST: gi|120480889|gb|EH211078.1|EH211078
genomic: CAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAGgtaaaaacaa ... ctgacattagGTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATT
EST: CAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAG GTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATTEST: gi|71764883|gb|DR962820.1|DR962820
genomic: CAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAGgtaaaaacaa ... ctgacattagGTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATT
EST: CAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAG GTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATTEST: gi|32914512|gb|CF019324.1|CF019324
genomic: CAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAGgtaaaaacaa ... ctgacattagGTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATT
EST: CAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAG GTTGGAGCTGAAATAGTGAGGAGGGCCCTGAGCTACCCTTTTAAATTGATTEST: gi|148961769|gb|EE012546.2|EE012546
genomic: CAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAGgtaaaaacaa ... ctgacattagGTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATT
EST: CAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAG GTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATT
genomic: CAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAGgtaaaaacaa ... ctgacattagGTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGGCTTGCAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAGgtaaaaacaaaatctgcaatcccgtaattcatttgaaagaggatggaggcaacagagcacaaccttgctataggttcaactatggctgacattctgaactgacattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG