1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTGGGAGCACAAACAGAAACTGAACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAGgtaagttgtcgaagtaattaacttgtgctgccagatttatatttctcatatttaattcacatgtataatgatatatgatgttggatgaaaaaattataga...
species | Zea mays |
transcript | GRMZM2G083716_T03 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AATTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAG GCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGGEST: gi|148983128|gb|EE029059.2|EE029059
genomic: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAGgtaagttgtc ... ctcttcacagGCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGG
EST: CCCTAAATGCAACTAAG GCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGGEST: gi|211283747|gb|FL354677.1|FL354677
genomic: CCCTAAATGCAACTAAGgtaagttgtc ... ctcttcacagGCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGG
EST: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAG GCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGGEST: gi|149099157|gb|EE185182.2|EE185182
genomic: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAGgtaagttgtc ... ctcttcacagGCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGG
EST: TGCCCTAAATGCAACTAAG GCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGGEST: gi|33094001|gb|CF053995.1|CF053995
genomic: TGCCCTAAATGCAACTAAGgtaagttgtc ... ctcttcacagGCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGG
EST: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAG GCTGCCGTTGAGGAAGGTATTGTTGTTGGGGGAGGGTGCACTCTTTTGCGGEST: gi|22545503|gb|BU097862.1|BU097862
genomic: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAGgtaagttgtc ... ctcttcacagGCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGG
EST: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAG GCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGGEST: gi|60342862|gb|DN209835.1|DN209835
genomic: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAGgtaagttgtc ... ctcttcacagGCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGG
EST: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAG GCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGGEST: gi|211360073|gb|FL471663.1|FL471663
genomic: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAGgtaagttgtc ... ctcttcacagGCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGG
EST: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAG GCTGCCGTTGAGGAAGGTATTGTTGTTGGGGGAGGGTGCACTCTTTTGCGGEST: gi|87156784|gb|DY401573.1|DY401573
genomic: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAGgtaagttgtc ... ctcttcacagGCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGG
EST: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAG GCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGGEST: gi|24934364|gb|CA452582.1|CA452582
genomic: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAGgtaagttgtc ... ctcttcacagGCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGG
EST: AACTAAAAGAGAAGAAGTTGAGAATTGAGGATGCCCTAAATGCAACTAAG GCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGGEST: gi|32837828|gb|CD977506.1|CD977506
genomic: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAGgtaagttgtc ... ctcttcacagGCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGG
EST: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAG GCTGCCGTTGAGGAAGGTATTGTTGTTGGGGGAGGGTGCACTCTTTTGCGGEST: gi|211268071|gb|FL357474.1|FL357474
genomic: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAGgtaagttgtc ... ctcttcacagGCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGG
EST: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAG GCTGCCGTTGAGGAAGGTATTGTTGTTGGGGGAGGGTGCACTCTTTTGCGGEST: gi|71764883|gb|DR962820.1|DR962820
genomic: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAGgtaagttgtc ... ctcttcacagGCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGG
EST: GTTGAGAGTTGAGGATGCCCTAAATGCAACTAAG GCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTCTGCGGEST: gi|26558604|gb|CA830839.1|CA830839
genomic: GTTGAGAGTTGAGGATGCCCTAAATGCAACTAAGgtaagttgtc ... ctcttcacagGCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGG
EST: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAG GCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGGEST: gi|22545873|gb|BU098247.1|BU098247
genomic: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAGgtaagttgtc ... ctcttcacagGCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGG
EST: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAG GCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGGEST: gi|148961769|gb|EE012546.2|EE012546
genomic: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAGgtaagttgtc ... ctcttcacagGCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGG
EST: AATGCAACTAAG GCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTTTTTTGCGGEST: gi|120480889|gb|EH211078.1|EH211078
genomic: AATGCAACTAAGgtaagttgtc ... ctcttcacagGCTGCCGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGG
EST: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAG GCTGCCGTTGAGGAAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCG
genomic: AACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAGgtaagttgtc ... ctcttcacagGCTGCCGTTGAGG-AAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGGAGCACAAACAGAAACTGAACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCAACTAAGgtaagttgtcgaagtaattaacttgtgctgccagatttatatttctcatatttaattcacatgtataatgatatatgatgttggatgaaaaaattataga
- - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - AGGATG