1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGGTGGAAATTCAGTGGCTACTGTTGTCTTGAGAGGCAGTACTGACAGTATACTAGATGATCTTGAAAGAGCTGTTGATGATGGCGTCAATACGTACAAGgtatctatagtacatgtgacctaactcttttattgtattgtaacgttctgtgtctgttttgctaatctattcgagttctcactgtccttgtttattctagtcaatgtgcag
species | Zea mays |
transcript | GRMZM2G083095_T03 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TACTAGATGATCTTGAAAGAGCTGTTGATGATGGCGTCAATACGTACAAGTCAATGTGCAGEST: gi|24773918|gb|CA409172.1|CA409172
genomic: TACTAGATGATCTTGAAAGAGCTGTTGATGATGGCGTCAATACGT---A--C-A-----AGgtatctatag ...
EST: TACTAGATGATCTTGAAAGAGCTGTTGATGATGGCGTCAATACGTACAAG TEST: gi|24773918|gb|CA409172.1|CA409172
genomic: TACTAGATGATCTTGAAAGAGCTGTTGATGATGGCGTCAATACGTACAAGgtatctatag ... caatgtgcag-
EST: TACTAGATGATCTTGAAAGAGCTGTTGATGATGGCGTCAATACGTACAAG TEST: gi|24773918|gb|CA409172.1|CA409172
genomic: TACTAGATGATCTTGAAAGAGCTGTTGATGATGGCGTCAATACGTACAAGgtatctatag ... caatgtgcag-
EST: TACTAGATGATCTTGAAAGAGCTGTTGATGATGGCGTCAATACGTACAAG TEST: gi|24773918|gb|CA409172.1|CA409172
genomic: TACTAGATGATCTTGAAAGAGCTGTTGATGATGGCGTCAATACGTACAAGgtatctatag ... caatgtgcag-
EST: TACTAGATGATCTTGAAAGAGCTGTTGATGATGGCGTCAATACGTACAAG TEST: gi|24773918|gb|CA409172.1|CA409172
genomic: TACTAGATGATCTTGAAAGAGCTGTTGATGATGGCGTCAATACGTACAAGgtatctatag ... caatgtgcag-
EST: TACTAGATGATCTTGAAAGAGCTGTTGATGATGGCGTCAATACGTACAAG TEST: gi|24773918|gb|CA409172.1|CA409172
genomic: TACTAGATGATCTTGAAAGAGCTGTTGATGATGGCGTCAATACGTACAAGgtatctatag ... caatgtgcag-
EST: TACTAGATGATCTTGAAAGAGCTGTTGATGATGGCGTCAATACGTACAAG TEST: gi|60396537|gb|DN229406.1|DN229406
genomic: TACTAGATGATCTTGAAAGAGCTGTTGATGATGGCGTCAATACGTACAAGgtatctatag ... caatgtgcag-
EST: TACTAGATGATCTTGAAAGAGCTGTTGATGATGGCGTCAATACGTACAAGTCAATGTGCAGEST: gi|60337628|gb|DN204601.1|DN204601
genomic: TACTAGATGATCTTGAAAGAGCTGTTGATGATGGCGTCAATACGT---A--C-A-----AGgtatctatag ...
EST: TACTAGATGATCTTGAAAGAGCTGTTGATGATGGCGTCAATACGTACAAG GGACAGTAGGATAATTCCTGGTGCTGCTGCAACAGAAATAGAGCTGGCAAAEST: gi|91053532|gb|EB163950.1|EB163950
genomic: TACTAGATGATCTTGAAAGAGCTGTTGATGATGGCGTCAATACGTACAAGgtatctatag ... caatgtgcagGGACAGTAGGATAATTCCTGGTGCTGCTGCAACAGAAATAGAGCTGGCAAA
EST: TACTAGATGATCTTGAAAGAGCTGTTGATGATGGCGTCAATACGTACAAGTCAATGTGCAGEST: gi|60358886|gb|DN225859.1|DN225859
genomic: TACTAGATGATCTTGAAAGAGCTGTTGATGATGGCGTCAATACGT---A--C-A-----AGgtatctatag ...
EST: TACTAGATGATCTTGAAAGAGCTGTTGATGATGGCGTCAATACGTACAAGTCAATGTGCAG
genomic: TACTAGATGATCTTGAAAGAGCTGTTGATGATGGCGTCAATACGT---A--C-A-----AGgtatctatag ...
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTGGAAATTCAGTGGCTACTGTTGTCTTGAGAGGCAGTACTGACAGTATACTAGATGATCTTGAAAGAGCTGTTGATGATGGCGTCAATACGTACAAGgtatctatagtacatgtgacctaactcttttattgtattgtaacgttctgtgtctgttttgctaatctattcgagttctcactgtccttgtttattctagtcaatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT