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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTCTGCTGGCCCACAGCGCCCTCCATGGCGCCATGGCGGGGTACACCGGCTTCACGGTCGCTCCGGTCAACGGCAGGCACGCCTACATCCCGTTCTATgtaagtcgaaggccgaatgcagttgagcacacagcttcttgaacatggcttgttctgaaaccttgatgggcaatcgatctcttgtttgcag

Basic information

species Zea mays
transcript GRMZM2G080375_T06
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G080375_T04 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os01g09570.1 (Oryza sativa), 5'ss of exon 10
CACTCTGCTGGCCCACAGCGCCCTCCATGGCGCCATGGCGGGGTACACCGGCTTCACGGTCGCTCCGGTCAACGGCAGGCACGCCTACATCCCGTTCTATgtaagtcgaaggccgaatgcagttgagcacacagcttcttgaacatggcttgttctgaaaccttg-atgggcaatcgatctcttgtttgcag--------------------------------
||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || ||||||||||| ||||||| |   |  | |    || |     ||   | | |      | |   |      | |   |   |  ||| | |   |  |   |                                 
CACCCTGCTAGCTCACAGCGCCCTCCACGGCGCCATGGCGGGGTACACCGGCTTCACCGTCGCGCCGGTCAACGGCAGGCACGCGTATATCCCGTTCTACgtaagtccagaac--actctttttcaatgatcaatctttagtgttcagttcagttcagttcttcacaccagacatcaaccatatcctgataatctggacactgaaactccggcgatttctacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74234372|gb|DT642286.1|DT642286
EST:     GCTTCACGGTCGCTCCGGTCAACGGCAGGCACGCCTACATCCCGTTTTAT                         AGGATCACCGAGAAGCAGAACAAGGTGGTGATCACGGACCGGATGTGGGCG
genomic: GCTTCACGGTCGCTCCGGTCAACGGCAGGCACGCCTACATCCCGTTCTATgtaagtcgaa ... ttgtttgcagAGGATCACCGAGAAGCAGAACAAGGTGGTGATCACGGACCGGATGTGGGCG