Sequence
atgc intronic sequence ATGC exonic sequenceACATGATGGCCTCATGTTCAAGCAGAACTTCTCCATTAGGTCCTATGAGATTGGGGCTGATAGGACGGCATCTATAGAGACAATGATGAACCATTTGCAGgtaaggatttgttacatttgaggtgtgagattgttgtggctgaggattggactatgaaaaagtttggatttgatccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G079308_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os06g39520.2 (Oryza sativa), 5'ss of exon 2
ACATGATGGCCTCATGTTCAAGCAGAACTTCTCCATTAGGTCCTATGAGATTGGGGCTGATAGGACGGCATCTATAGAGACAATGATGAACCATTTGCAGgtaaggatttgttacatttgaggtgtgagattgttgtggctgaggattggactatgaaaaagttt--ggatttgatccag
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ACATGAGGGGCTCATGTTCAGGCAGAACTTCTCGATTAGGTCCTATGAGATCGGGGCCGATAGGACGGCGTCTATAGAAACGCTGATGAACCATTTGCAGgtgaaatattgtgaattttcaggcgtcggattgctcgggctgggcatcagaacattgaaatgtttttggttttgatgcag
upper sequence: GRMZM2G079308_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA04G21910.1 (Glycine max), 5'ss of exon 2
ACATGATGGCCTCATGTTCAAGCAGAACTTCTCCATTAGGTCCTATGAGATTGGGGCTGATAGGACGGCATCTATAGAGACAATGATGAACCATTTGCAGgtaaggatttgttacat----ttgaggtgtgagatt-gttgtggctgaggattggactatgaaaaagtttggatttgatccag-----------------
|| ||||| || |||||| |||||||||| |||||||||||||||||||||| || |||| || || ||||| ||||| | ||||| ||||||||||| || |||| | | |||| || | | | | || ||| | || || || || | |
GCAGGATGGGCTTGTGTTCAGGCAGAACTTCCCCATTAGGTCCTATGAGATTGGCGCCGATAAAACCGCGTCTATCGAGACTTTAATGAATCATTTGCAGgtcagcttttgcaaaaaattgctgagaattgcattcagcaatcacgataaatataacttttaataaattattatagaagttaagtaacttatcacgggtt
upper sequence: GRMZM2G079308_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA05G08060.3 (Glycine max), 5'ss of exon 2
ACATGATGGCCTCATGTTCAAGCAGAACTTCTCCATTAGGTCCTATGAGATTGGGGCTGATAGGACGGCATCTATAGAGACAATGATGAACCATTTGCAGgtaag---gatttgttacatttgaggtgtga-gattgttgtggctgaggat---tggactatgaaaaagtt-tggatttgatc-cag----------------------------------------------------------------------------------
|| ||||| || ||||| | ||||| || ||||| || ||||||||||| |||||| | || ||||||||||| ||| | |||||||||||||| ||||| | | |||| ||| | | ||| | | |||| || | ||||| || | | | | |||| || | |
TCAGGATGGTCTTGTGTTCCGTGAAAACTTTTCTATTAGATCATATGAGATTGGTGCTGATCGTACCGCATCTATAGAAACAGTAATGAACCATTTGCAAgtaagtccgtcctcatacaagtgaatctttatgatcttcagagatgagtatgctttgactaagatagggctgtttatttagtcactgtaattcaatttcatatatagataatatcattctgttgttacttttcatactatatttatatcaactatttgcttaacaacag
upper sequence: GRMZM2G079308_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA17G12940.2 (Glycine max), 5'ss of exon 2
ACATGATGGCCTCATGTTCAAGCAGAACTTCTCCATTAGGTCCTATGAGATTGGGGCTGATAGGACGGCATCTATAGAGACAATGATGAACCATTTGCAGgtaag---gatttgttacatttgaggtgtga-gattgttgtggctgaggat---tggactatgaaaaagtt-tggatttgatccag---------------------------------------------------------------------------------------
|| ||||| ||| ||||| | ||||| || ||||| || ||||||||||| |||||| | || ||||||||||| ||| | |||||||||||||| ||||| | | |||| ||| | | || | | |||| || | ||||| || | | | | |||| |
TCAGGATGGTCTCGTGTTCCGTGAAAACTTTTCTATTAGATCATATGAGATTGGTGCTGATCGAACCGCATCTATAGAAACAGTAATGAACCATTTGCAAgtaagttcgtcctcatacaagtgaatctttatgagcttcagagatgagtatgttttgactaggacagggctgtatatttagttacactgcataattgaatttcatgtatagataatatcatcctgttgttacttttcatacttgatttatatcaactatttgcttaacaacag
upper sequence: GRMZM2G079308_T01 (Zea mays), 5'ss of exon 9
lower sequence: PP1S433_34V6.1 (Physcomitrella patens), 5'ss of exon 2
ACATGATGGCCTCATGTTCAAGCAGAACTTCTCCATTAGGTCCTATGAGATTGGGGCTGATAGGACGGCATCTATAGAGACAATGATGAACCATTTGCAGgtaagga------tttgttacatttgaggtgtgagattgtt--gtggctgaggattggactatgaaaaagtttggatttgatccag----------------
| | || ||| ||| | ||| ||| | || ||||||||||| |||||||| || |||||||| ||| | |||||||||||||| |||||| | |||| | | | || | | | || | ||| | | || || | | || ||
GGAGAGCAGGCTAGTGTATCGGCAAACGTTCGTGATTCGCTCGTATGAGATTGGAGCTGATAGAACCGCATCTATTGAGGCTATGATGAACCATTTCCAGgtatctaaccacctttggtccgtctgcaccgacattctagcaagttgtcagctgttgaatt-catgaatgtcaaggctc-atgcaatacctctctgtagaat
upper sequence: GRMZM2G079308_T01 (Zea mays), 5'ss of exon 9
lower sequence: PP1S3_298V6.1 (Physcomitrella patens), 5'ss of exon 1
ACATGATGGCCTCATGTTCAAGCAGAACTTCTCCATTAGGTCCTATGAGATTGGGGCTGATAGGACGGCATCTATAGAGACAATGATGAACCATTTGCAGgtaa--ggatttgttac--atttgaggtgtgagattgttgtggctgaggattggactatgaaaaagtttggattt-gatccag---------------------------------------------------------------------------------------
| | | || | | |||| ||| ||| |||| ||||||||||| |||||| | ||||| ||||| ||||| |||||||| ||||| ||||||| ||| | || || | | || | |||||| | ||| || | | ||| | |
GGAAAGTAGGCTAGTTTATCGACAGACTTTCGTGATTCGGTCATATGAGATTGGAGCTGATCGAACGGCTTCTATTGAGACTATGATGAATCATTTCCAGgtaattggacaatctggcggttcactgtctcacatattcatggctggcaggttcacttgctggttattggcgtggagattccgtagttagtaatggatgtgttgacttcataagttttgttaattgtacgagtagagctcaacaagagttttgtgccggtccttgtgcag
upper sequence: GRMZM2G079308_T01 (Zea mays), 5'ss of exon 9
lower sequence: PP1S121_22V6.1 (Physcomitrella patens), 5'ss of exon 1
ACATGATGGCCTCATGTTCAAGCAGAACTTCTCCATTAGGTCCTATGAGATTGGGGCTGATAGGACGGCATCTATAGAGACAATGATGAACCATTTGCAGgtaaggatttgttacat-----------ttgaggtgtgagattg----ttgtggctgaggattggactatgaaaaagtttggatttgatccag-------
| | || ||| | ||| | ||| ||| | || || |||||||| |||||||| || ||||| || ||||| |||||||||||||| ||||||| | ||| | || || ||| | | || ||| | || | || ||| || | | |
GGAGAGCAGACTAGTGTACGGGCAAACATTCGTGATTCGCTCGTACGAGATTGGAGCTGATAGAACCGCATCCATTGAGACGATGATGAACCATTTTCAGgtaactaattggtcaataaatttccgccttccatcatgatactcatacttacctctgcgcatcgacacccacctaaatttctatcttgtaaaatttatgg
upper sequence: GRMZM2G079308_T01 (Zea mays), 5'ss of exon 9
lower sequence: PP1S167_109V6.1 (Physcomitrella patens), 5'ss of exon 1
ACATGATGGCCTCATGTTCAAGCAGAACTTCTCCATTAGGTCCTATGAGATTGGGGCTGATAGGACGGCATCTATAGAGACAATGATGAACCATTTGCAGgtaa--gga---tttgttacatttgaggtgtgagattgttgtggctgaggattggactatgaaaaagtttggatt--tgatccag-----------------------------------------------------------------------------------------------------------
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GGAGAGCAGGCTAGTGTACCGGCAGACATTTGTGATTCGCTCATATGAGATAGGAGCTGATCGAACGGCCTCCATCGAGACAATGATGAATCATTTCCAGgtaattgggcattctgtttgcttagcgtcgtgtaaat-tcatggttggcaggttca-tgcgtcgcagtctacatggatattctggatcctttaccctgtgagttttttttttttttttttttttttttttttttttttctgtttacttgcctagtgcaactcaacaaaacttttgtgccggaccttgtgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211076640|gb|FL394059.1|FL394059EST: TAGAGACAATGATGAACCATTTGCAG GAAACGGCACTTAATCATGTGAAGACCGCTGGGCTGCTAGGTGATGGATTC
genomic: TAGAGACAATGATGAACCATTTGCAGgtaaggattt ... tttgatccagGAAACGGCACTTAATCATGTGAAGACCGCTGGGCTGCTAGGTGATGGATTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACATGATGGCCTCATGTTCAAGCAGAACTTCTCCATTAGGTCCTATGAGATTGGGGCTGATAGGACGGCATCTATAGAGACAATGATGAACCATTTGCAGgtaaggatttgttacatttgaggtgtgagattgttgtggctgaggattggactatgaaaaagtttggatttgatccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT