Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTAGTATCTCTTTGACCTACATAGCTTCTGAAAGGATAATTCCTGGgtaattatttctttgttgatttcacagctaagctatcagcgctcgttacttatgattgttttggtgattgctttgtag

Basic information

species Zea mays
transcript GRMZM2G079256_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G079256_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os09g10600.1 (Oryza sativa), 5'ss of exon 9
---GTGCTAGTATCTCTTTGACCTACATAGCTTCTGAAAGGATAATTCCTGGgtaattatttctttgttgatt-tcacagctaagctatcagcgctcgttacttatgattgttttggtgattgcttt-gtag
   |||||| ||| || ||||||||||||||||| ||||||| ||||||||||| | || |   |   || || ||||  ||||  | | ||   | |||||||||  ||  |||  | ||||||||  |||
GGGGTGCTACTATATCCTTGACCTACATAGCTTCCGAAAGGACAATTCCTGGgtgaatactctctcaatgtttatcacttctaaattgtgagtatt-gttacttatattttgttt--ttattgcttttatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60345537|gb|DN212510.1|DN212510
EST:     GGTGCTAGTATCTCTTTGACCTACATAGCTTCTGAAAGGATAATTCCTGG                         CTACGGTGGTGGTAT-AGTTCAGCAAAAGCAGCTC
genomic: --TGCTAGTATCTCTTTGACCTACATAGCTTCTGAAAGGATAATTCCTGGgtaattattt ... tgctttgtagCTACGGTGGTGGTATGAGTTCAGCAAAAGCAGCTC