1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TCCTTGGTACCATGAACGCCTGATGCATCAAACTTCTATGGGATCTTTGATGGTTGTAATACTAATTCAGACCATCAAGTACAACCTCTCCAAGCTAAGAgtaggtatcagaatcttcgttgttttgtacagaaaatagaaactaggttcctgatcaccaattggaaactgccttttgaactttgctgctatttactgctatagtttgtactgtgtgcaacattatttgtagtgctaactgtttaatgataagattatatacacttgcag
species | Zea mays |
transcript | GRMZM2G078576_T03 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TGGTTGTAATACTAATTCAGACCATCAAGTACAACCTCTCCAAGCTAAGA GATGTCTACCTTCACACAAACTGTCTTGCAATTTTAGCAAATATGGCTCEST: gi|32793737|gb|CD945973.1|CD945973
genomic: TGGTTGTAATACTAATTCAGACCATCAAGTACAACCTCTCCAAGCTAAGAgtaggtatca ... acacttgcagGATGTCTACCTTCACACAAACTGTCTTGCAATTTTAGCAAATATGGCTC
EST: TGGTTGTAATACTAATTCAGACCATCAAGTACAACCTCTCCAAGCTAAGA GATGTCTACCTTCACACAAACTGTCTTGCAATTTTAGCAAATATGGCTCCTEST: gi|7304677|gb|AW600616.1|AW600616
genomic: TGGTTGTAATACTAATTCAGACCATCAAGTACAACCTCTCCAAGCTAAGAgtaggtatca ... acacttgcagGATGTCTACCTTCACACAAACTGTCTTGCAATTTTAGCAAATATGGCTCCG
EST: TGGTTGTAATACTAATTCAGACCATCAAGTACAACCTCTCCAAGCTAAGA GATGTCTACCTTCACACAAACTGTCTTGCAATTTTAGCAAATATGGCTCCG
genomic: TGGTTGTAATACTAATTCAGACCATCAAGTACAACCTCTCCAAGCTAAGAgtaggtatca ... acacttgcagGATGTCTACCTTCACACAAACTGTCTTGCAATTTTAGCAAATATGGCTCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTTGGTACCATGAACGCCTGATGCATCAAACTTCTATGGGATCTTTGATGGTTGTAATACTAATTCAGACCATCAAGTACAACCTCTCCAAGCTAAGAgtaggtatcagaatcttcgttgttttgtacagaaaatagaaactaggttcctgatcaccaattggaaactgccttttgaactttgctgctatttactgctatagtttgtactgtgtgcaacattatttgtagtgctaactgtttaatgataagattatatacacttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT