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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTAAAGGCACTGGCAACATGGGAAGTTGATTCTGTGGGAAATGCTACCGGAATTCCTGCTTCAATGTACCTCTTGCTTGgtaacttttatgatccgaccttctttttgtacagttcaccatatgataaatgagtaatattttcagtaagataattattccgttatgattaattgcatgtattcctttctttctgaag

Basic information

species Zea mays
transcript GRMZM2G078458_T04
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G078458_T05 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os06g03676.1 (Oryza sativa), 5'ss of exon 9
ATGTAAAGGCACTGGCAACATGGGAAGTTGATTCTGTGGGAAATGCTACCGGAATTCCTGCTTCAATGTACCTCTTGCTTGgtaacttttatgatccgaccttctttttgtacagttcaccatatgataaatgagt------aatattttca-gtaagataattattccgttatgattaattgcatgtattcctttctttctgaag
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ATGTAAAGGCGCTGGCAACATGGGAAGTTGATTCCATGGGACATGTTACTGGATGTCCTTCTTCAATGTACCTTGTACTAGgta-cataagtagctccagtttccttttgataagagaacctcatgatctttcctttaatcaaatattttgatataagattatagttccaattta--tgactgtttatttttgtatctccctctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78108131|gb|DV526549.1|DV526549
EST:     TCTGTGGGAAATGCTACCGGGAATTCCTGCTTCATTGTACCTCTTGCTTG                         CTGATAAAAGTCCT
genomic: TCTGTGGGAAATGCTACCGG-AATTCCTGCTTCAATGTACCTCTTGCTTGgtaactttta ... ctttctgaagCTGATAAAAGTCCT
EST: gi|211219813|gb|FL295369.1|FL295369
EST:     TTCTGTGGGAAATGCTACCGGAATTCCTGCTTCAATGTACCTCTTGCTTG                         CTGATAAAAGTTCTGCTGAGACTGGAGCANAGATCTGCATAAACTACGGCA
genomic: TTCTGTGGGAAATGCTACCGGAATTCCTGCTTCAATGTACCTCTTGCTTGgtaactttta ... ctttctgaagCTGATAAAAGTCCTGCTGAGACTGGAGCAGAGATCTGCATAAACTACGGCA