1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ACAATGACACCCTTTGATCAAGGCTCTAAGTTAACCTCAGCAAGTTCATGGAATGAACAGATTGCCCATGGAATGATTCCACCACAGCAGTTTGCCCATGgtattaccgtctcttttaatctaagcttctagcatgtacaagtatcttagtattatttttgtttgttctattagtttgtacctggtaaagcgttaaaaac...
species | Zea mays |
transcript | GRMZM2G077844_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GAATGAACAGATTGCCCATGGAATGATTCCACCACAGCAGTTTGCCCATG GTCAAGGTGAACAAAGCAACGACCTTCCACTACCACCCTGGGAAGCTCTGCEST: gi|31558197|gb|CD527409.1|CD527409
genomic: GAATGAACAGATTGCCCATGGAATGATTCCACCACAGCAGTTTGCCCATGgtattaccgt ... tccttgacagGTCAAGGTGAACAAAGCAACGACCTTCCACTACCACCCTGGGAAGCTCTGC
EST: GAATGAACAGATTGCCCATGGAATGATTCCACCACAGCAGTTTGCCCATG GTCAAGGTGAACAAAGCAACGACCTTCCACTACCACCCTGGGAAGCTCTGCEST: gi|31664025|gb|CD573205.1|CD573205
genomic: GAATGAACAGATTGCCCATGGAATGATTCCACCACAGCAGTTTGCCCATGgtattaccgt ... tccttgacagGTCAAGGTGAACAAAGCAACGACCTTCCACTACCACCCTGGGAAGCTCTGC
EST: GAATGAACAGATTGCCCATGGAATGATTCCACCACAGCAGTTTGCCCATG GTCAAGGTGAACAAAGCAACGACCTTCCACTACCACCCTGGGAAGCTCTGCEST: gi|87154087|gb|DY398876.1|DY398876
genomic: GAATGAACAGATTGCCCATGGAATGATTCCACCACAGCAGTTTGCCCATGgtattaccgt ... tccttgacagGTCAAGGTGAACAAAGCAACGACCTTCCACTACCACCCTGGGAAGCTCTGC
EST: GAATGAACAGATTGCCCATGGAATGATTCCACCACAGCAGTTTGCCCATG GTCAAGGTGAACAAAGCAACGACCTTCCACTACCACCCTGGGAAGCTCTGCEST: gi|22545133|gb|BU097492.1|BU097492
genomic: GAATGAACAGATTGCCCATGGAATGATTCCACCACAGCAGTTTGCCCATGgtattaccgt ... tccttgacagGTCAAGGTGAACAAAGCAACGACCTTCCACTACCACCCTGGGAAGCTCTGC
EST: GAATGAACAGATTGCCCATGGAATGATTCCACCACAGCAGTTTGCCCATG GTCAAGGTGAACAAAGCAACGACCTTCCACTACCACCCTGGGAAGCTCTGCEST: gi|26455538|gb|CA827121.1|CA827121
genomic: GAATGAACAGATTGCCCATGGAATGATTCCACCACAGCAGTTTGCCCATGgtattaccgt ... tccttgacagGTCAAGGTGAACAAAGCAACGACCTTCCACTACCACCCTGGGAAGCTCTGC
EST: GAATGAACAGATTGCCCATGGAATGATTCCACCACAGCAGTTTGCCCATG GTCAAGGTGAACAAAGCAACGACCTTCCACTACCACCCTGGGAAGCTCTGCEST: gi|67035055|gb|CO463588.1|CO463588
genomic: GAATGAACAGATTGCCCATGGAATGATTCCACCACAGCAGTTTGCCCATGgtattaccgt ... tccttgacagGTCAAGGTGAACAAAGCAACGACCTTCCACTACCACCCTGGGAAGCTCTGC
EST: GAATGAACAGATTGCCCATGGAATGATTCCACCACAGCAGTTTGCCCATG GTCAAGGTGAACAAAGCAACGACCTTCCACTACCACCCTGGGAAGCTCTGCEST: gi|87154405|gb|DY399194.1|DY399194
genomic: GAATGAACAGATTGCCCATGGAATGATTCCACCACAGCAGTTTGCCCATGgtattaccgt ... tccttgacagGTCAAGGTGAACAAAGCAACGACCTTCCACTACCACCCTGGGAAGCTCTGC
EST: GAATGAACAGATTGCCCATGGAATGATTCCACCACAGCAGTTTGCCCATG GTCAAGGTGAACAAAGCAACGACCTTCCACTACCACCCTGGGAAGCTCTGCEST: gi|21330304|gb|BQ485685.1|BQ485685
genomic: GAATGAACAGATTGCCCATGGAATGATTCCACCACAGCAGTTTGCCCATGgtattaccgt ... tccttgacagGTCAAGGTGAACAAAGCAACGACCTTCCACTACCACCCTGGGAAGCTCTGC
EST: GAATGAACAGATTGCCCATGGAATGATTCCACCACAGCAGTTTGCCCATG GTCAAGGTGAACAAAGCAACGACCTTCCACTACCACCCTGGGAAGCTCTGCEST: gi|89106676|gb|DY576893.1|DY576893
genomic: GAATGAACAGATTGCCCATGGAATGATTCCACCACAGCAGTTTGCCCATGgtattaccgt ... tccttgacagGTCAAGGTGAACAAAGCAACGACCTTCCACTACCACCCTGGGAAGCTCTGC
EST: GAATGAACAGATTGCCCATGGAATGATTCCACCACAGCAGTTTGCCCATG GTCAAGGTGAACAAAGCAACGACCTTCCACTACCACCCTGGGAAGCTCTGC
genomic: GAATGAACAGATTGCCCATGGAATGATTCCACCACAGCAGTTTGCCCATGgtattaccgt ... tccttgacagGTCAAGGTGAACAAAGCAACGACCTTCCACTACCACCCTGGGAAGCTCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAATGACACCCTTTGATCAAGGCTCTAAGTTAACCTCAGCAAGTTCATGGAATGAACAGATTGCCCATGGAATGATTCCACCACAGCAGTTTGCCCATGgtattaccgtctcttttaatctaagcttctagcatgtacaagtatcttagtattatttttgtttgttctattagtttgtacctggtaaagcgttaaaaac
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