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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGGAAATTTGGGGAGGAAGGAAATAAGTACTTCCGTCATGCTACAGGGCAGATATATGCCATTTCGAAAGATCTGGCGACTTATATCTCAATCAATCGgtatgtttaattcgtgttcacgacatacaaaagggtgcctgtccatctaaagggaaactaactgatgctgcaagcgatatttttcag

Basic information

species Zea mays
transcript GRMZM2G070708_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070708_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g35870.1 (Oryza sativa), 5'ss of exon 9
ACTGGAAATTTGGGGAGGAAGGAAATAAGTACTTCCGTCATGCTACAGGGCAGATATATGCCATTTCGAAAGATCTGGCGACTTATATCTCAATCAATCGgtatgtttaattcgtgttcacgacatacaaaagggtgcctgtccatctaaagggaaactaactgatgctgcaagcgatatttt-tcag
|||||||||||||||||||||| || || ||||||||||||||||| ||||||||||| || ||||| ||||| || ||||| || || |||||||| | ||||||||  |  |    || | ||| |||||         ||| | | |  | |||   ||| ||| | | |  ||| |||| ||||
ACTGGAAATTTGGGGAGGAAGGGAACAAATACTTCCGTCATGCTACTGGGCAGATATACGCGATTTCAAAAGACCTCGCGACCTACATTTCAATCAACCAgtatgtttcctatgc---catgccatgcaaaa---------tccttatgaccgaaaaaatactaatgtttccaatgatgttttgtcag

upper sequence: GRMZM2G070708_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA04G43340.2 (Glycine max), 5'ss of exon 9
ACTGGAAATTTGGGGAGGAAGGAAATAAGTACTTCCGTCATGCTACAGGGCAGATATATGCCATTTCGAAAGATCTGGCGACTTATATCTCAATCAATCGgtatgtttaattcgtgtt-cacgacatacaaaagggtgcctgtccatctaaagggaaactaactg-atgctgcaagcgatatttttcag-------------
  ||||| ||||| || || || || || |||||||| ||||| || |||||||||||||| || || || |||||||| ||||| || || ||||| | |||||| ||     | |    | |||   ||  || |  ||    ||||   || |    |||||  |  |     |     ||  |||             
TTTGGAAGTTTGGAGAAGAGGGGAACAAATACTTCCGACATGCAACTGGGCAGATATATGCAATCTCAAAGGATCTGGCCACTTACATTTCCATCAACCAgtatgtatatcatttttcgtgcaacacttaactggctatcttctgatctc--ggcaccacaactgtgtattttgtacagggattaccagatgagcaattgtt

upper sequence: GRMZM2G070708_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA13G02420.1 (Glycine max), 5'ss of exon 9
ACTGGAAATTTGGGGAGGAAGGAAATAAGTACTTCCGTCATGCTACAGGGCAGATATATGCCATTTCGAAAGATCTGGCGACTTATATCTCAATCAATCGgtatgtttaattcgtgttcacgacatacaaaagggtgcctgtccatctaa-----agggaaactaac--tgatgctgca-agcgatatttttcag--------
  ||||||||||| || || || || || |||||||| ||||| || |||||||||||||| || || || |||||||| || || || || ||||| | |||||    || ||  ||  | |     |    | | ||| |   |   |     || |   ||||   |||  |   | | |  || |              
TTTGGAAATTTGGAGAAGAGGGGAACAAATACTTCCGACATGCAACTGGGCAGATATATGCAATCTCTAAGGATCTGGCCACCTACATTTCCATCAACCAgtatg---gatacgcttttccaattagtacttagcttcctatggttgagagtatcagaggggctaatgttgaccccatacaactgtagtgcatgatcaagaat

upper sequence: GRMZM2G070708_T02 (Zea mays), 5'ss of exon 9
lower sequence: AT1G77810.2 (Arabidopsis thaliana), 5'ss of exon 9
ACTGGAAATTTGGGGAGGAAGGAAATAAGTACTTCCGTCATGCTACAGGGCAGATATATGCCATTTCGAAAGATCTGGCGACTTATATCTCAATCAATCGgtatgtttaattcgtgttcacgacatacaaaagggtgcctgtccatctaaagggaaactaactgatgctgcaagcgatatttttcag
| ||||||||||| ||||| || || || ||||| || ||||||||||| ||||| |||||||| || || ||||| || | ||| || || ||||| | ||| ||    |  |  | |    |||| | |     |||| |||||| || |     |  |       | |||    |  | | |||
ATTGGAAATTTGGAGAGGATGGTAACAAATACTTTCGACATGCTACAGGACAGATCTATGCCATCTCCAAGGATCTTGCTAATTACATATCCATCAACCAgtacgtact-tctgcatccttttcataaaga-----gcct-tccatcaaatgtttgtcctaaaaggtttacaact--ttgtatgcag

upper sequence: GRMZM2G070708_T02 (Zea mays), 5'ss of exon 9
lower sequence: Vv07s0031g03090.t01 (Vitis vinifera), 5'ss of exon 9
ACTGGAAATTTGGGGAGGAAGGAAATAAGTACTTCCGTCATGCTACAGGGCAGATATATGCCATTTCGAAAGATCTGGCGACTTATATCTCAATCAATCGgtatgtttaattcgtg-ttcacgacatacaaa-----agggtgcctgtccatctaaagggaaac-taactgatgctgcaagcgatatttttcag------
||||||||||||| ||||| || ||||||||||| || ||||| || |||||||| |||||||| || || |||||||| || ||||||||  |||| | ||| |   |  |  || ||  |    |||| |     |  |   |  ||   | ||| |      ||  | ||  |  ||    | || |  ||      
ACTGGAAATTTGGAGAGGAGGGGAATAAGTACTTTCGGCATGCAACCGGGCAGATTTATGCCATCTCAAAGGATCTGGCCACATATATCTCTGTCAACCAgtaagaacagataatggttttcagtctacagagtctcatagattccatcttccaaaatgtttttatatataatattttaaatttttttctctagtcactg

upper sequence: GRMZM2G070708_T02 (Zea mays), 5'ss of exon 9
lower sequence: Vv18s0001g04150.t01 (Vitis vinifera), 5'ss of exon 9
ACTGGAAATTTGGGGAGGAAGGAAATAAGTACTTCCGTCATGCTACAGGGCAGATATATGCCATTTCGAAAGATCTGGCGACTTATATCTCAATCAATCGgtatgtttaattcgtgttcacgacatacaaa-agggtgcctgtccatctaaaggg-----aaactaactgatgctgcaagcgatatttttcag---------
||||||| ||||| ||||| || || ||||| ||||| ||||| || |||||||| ||||| || || ||||||||||| || || ||||| ||||| | ||| |   | |  || ||    | ||  ||  ||  ||  || |||| |   | |     | |  ||  | |  |||||   ||    |             
ACTGGAAGTTTGGAGAGGAGGGGAACAAGTATTTCCGGCATGCAACTGGGCAGATTTATGCAATCTCAAAAGATCTGGCCACATACATCTCGATCAACCAgtaag--aattgagttttttttatatggaattagcctgtttggccattttctgagctaccatatcaaaaggtcttgcaattcatcccctgggcatgattttc

upper sequence: GRMZM2G070708_T02 (Zea mays), 5'ss of exon 9
lower sequence: EFJ23757 (Selaginella moellendorffii), 5'ss of exon 8
ACTGGAAATTTGGGGAGGAAGGAAATAAGTACTTCCGTCATGCTACAGGGCAGATATATGCCATTTCGAAAGATCTGGCGACTTATATCTCAATCAATCGgtatgtttaattcgtgttcacgacatacaaaagggtgcctgtccatctaaagggaaactaactgatgctgcaagcgatatttttcag
| ||||| ||||| || || || |||| |||||| ||||| || || || ||| ||||||| ||||| || ||||||||||| |||||||| ||||| | ||||||||   | |    |     || |||     |   |||           ||   |  ||  |   |||               
ATTGGAAGTTTGGAGAAGATGGCAATAGGTACTTTCGTCACGCAACTGGTCAGCTATATGCGATTTCCAAGGATCTGGCGACATATATCTCCATCAACCAgtatgtttggat-gcaagctttggattcaatcttctatttgtttcct------gattttctcttctttcgcag--------------

upper sequence: GRMZM2G070708_T02 (Zea mays), 5'ss of exon 9
lower sequence: EFJ21395 (Selaginella moellendorffii), 5'ss of exon 8
ACTGGAAATTTGGGGAGGAAGGAAATAAGTACTTCCGTCATGCTACAGGGCAGATATATGCCATTTCGAAAGATCTGGCGACTTATATCTCAATCAATCGgtatgtttaattcgtgttcacgacatacaaaagggtgcctgtccatctaaagggaaactaactgatgctgcaagcgatatttttcag
| ||||| ||||| || || || |||| |||||| ||||| || || || ||| ||||||| ||||| || ||||||||||| |||||||| || || | ||||||||   | |    |     || |||     |   |||           ||   |  ||  |  ||||               
ATTGGAAGTTTGGAGAAGATGGCAATAGGTACTTTCGTCACGCAACTGGTCAGCTATATGCGATTTCCAAGGATCTGGCGACATATATCTCCATTAACCAgtatgtttggat-gcaagctttggattcaatcttctatttgtttcct------gattttctcttcttttgcag--------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32823095|gb|CD962817.1|CD962817
EST:     GATCTGGCGACTTATATCTCAATCAATCG                         GCCTATCTTGCACAAATACGCAAACGAAGACGTGTCGCTTGGACCGTGGTT
genomic: GATCTGGCGACTTATATCTCAATCAATCGgtatgtttaa ... tatttttcagGCCTATCTTGCACAAATACGCAAACGAAGACGTGTCGCTTGGATCGTGGTT
EST: gi|211239910|gb|FL238805.1|FL238805
EST:     CAGATATATGCCATTTCGAAAGATCTGGCGACTTATATCTCAATCAATCG                         GCCTATCTTGCACAAATACGCAAACGAAGACGTGTCGCTTGGATCGTGGTT
genomic: CAGATATATGCCATTTCGAAAGATCTGGCGACTTATATCTCAATCAATCGgtatgtttaa ... tatttttcagGCCTATCTTGCACAAATACGCAAACGAAGACGTGTCGCTTGGATCGTGGTT
EST: gi|32792940|gb|CD945176.1|CD945176
EST:     GATCTGGCGACTTATATCTCAATCAATCG                         GCCTATCTTGCACAAATACGCAAACGAAGACGTGTCGCTTGGATCGTGGTT
genomic: GATCTGGCGACTTATATCTCAATCAATCGgtatgtttaa ... tatttttcagGCCTATCTTGCACAAATACGCAAACGAAGACGTGTCGCTTGGATCGTGGTT
EST: gi|32839092|gb|CD978773.1|CD978773
EST:     CAGATATATGCCATTTCGAAAGATCTGGCGACTTATATCTCAATCAATCG                         GCCTATCTTGCACAAATACGCAAACGAAGACGTGTCGCTTGGATCGTGGTT
genomic: CAGATATATGCCATTTCGAAAGATCTGGCGACTTATATCTCAATCAATCGgtatgtttaa ... tatttttcagGCCTATCTTGCACAAATACGCAAACGAAGACGTGTCGCTTGGATCGTGGTT
EST: gi|211169871|gb|FL077600.1|FL077600
EST:     CAGATATATGCCATTTCGAAAGATCTGGCGACTTATATCTCAATCAATCG                         GCCTATCTTGCACAAATACGCAAACGAAGACGTGTCGCTTGGGATCGTGGT
genomic: CAGATATATGCCATTTCGAAAGATCTGGCGACTTATATCTCAATCAATCGgtatgtttaa ... tatttttcagGCCTATCTTGCACAAATACGCAAACGAAGACGTGTCGCTTGG-ATCGTGGT
EST: gi|32790616|gb|CD942852.1|CD942852
EST:     GATCCGGCGACTTATATCTCAATCAATCG                         GCCTATCTTGCACAAATACGCAAACGAAGACGTGTCGCTTGGATCGTGGTT
genomic: GATCTGGCGACTTATATCTCAATCAATCGgtatgtttaa ... tatttttcagGCCTATCTTGCACAAATACGCAAACGAAGACGTGTCGCTTGGATCGTGGTT