Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTGGgtaactattctgttgagctttttgcaacggggcaatttttatgctatggcaccttgtgactgttatattgagtttgttctctcatag

Basic information

species Zea mays
transcript GRMZM2G070422_T03
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070422_T03 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os08g23810.2 (Oryza sativa), 5'ss of exon 9
GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTGGgtaactattctgtt-gagctttttgcaacggggcaatttttatgctatggcaccttgtgactgttatattgagtttgttctctcatag
||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||   | || ||| |||     ||   |||  |||| |   ||   || |   |   || ||  ||| | | |    |  |||
GTGGTGCTTCCATCTCTCTAACATACATTGCATCTGAAAGGGCAATTCCTGGgtaactacattatttgagatttaaaatacaaagca--ttttgtatcat--tacttaccggtggtaattctgattatatatatttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6526869|gb|AW216132.1|AW216132
EST:     GGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTGG                         GTATGGTGGTGGGATGAGTTCTGCTAA
genomic: GGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTGGgtaactattc ... tctctcatagGTATGGTGGTGGGATGAGTTCTGCTAA
EST: gi|60396705|gb|DN229571.1|DN229571
EST:     GGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTGG                         GTATGGTGGTGGGATGAGTTCTGCTAAAGCAGCTCTTGAGAGTGATACACG
genomic: GGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTGGgtaactattc ... tctctcatagGTATGGTGGTGGGATGAGTTCTGCTAAAGCAGCTCTTGAGAGTGATACACG
EST: gi|166615957|gb|EG102324.1|EG102324
EST:     AACATACATTGCATCTGAAAGGGCGATTCCTGG                         GTATGGTGGTGGGATGAGTTCTGCTAAAGCAGCTCTTGAGAGTGATACACG
genomic: AACATACATTGCATCTGAAAGGGCGATTCCTGGgtaactattc ... tctctcatagGTATGGTGGTGGGATGAGTTCTGCTAAAGCAGCTCTTGAGAGTGATACACG
EST: gi|84980240|gb|DW530589.1|DW530589
EST:     GGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTGG                         GTATGGTGGTGGGATGAGTTCTGCTAAAGCAGCTCTTGAGAGTGATACACG
genomic: GGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTGGgtaactattc ... tctctcatagGTATGGTGGTGGGATGAGTTCTGCTAAAGCAGCTCTTGAGAGTGATACACG
EST: gi|31353471|gb|CD437828.1|CD437828
EST:     GGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTGG                         GTATGGTGGTGGGATGAGTTCTGCTAAAGCAGCTCTTGAGAGTGATACACG
genomic: GGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTGGgtaactattc ... tctctcatagGTATGGTGGTGGGATGAGTTCTGCTAAAGCAGCTCTTGAGAGTGATACACG