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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAGgtaatattggctttttttcattcctgctagatgtagcaatgtgtgttgacgccagttaccttcagataattgttccatcgtgcaaagttcacatgcaacttcgtttagtggttagatcttttttctgtgatgaattttattttcttagttcctctttctttcctcag

Basic information

species Zea mays
transcript GRMZM2G070113_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070113_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os05g36120.1 (Oryza sativa), 5'ss of exon 9
TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAGgtaatattggctttttttcattcctgct---agatg------tagcaatgtgtgttgacgccagttaccttcagataattgttccatcgtgcaaagttcaca-tgcaacttcgtttagtggttagatcttttttctgtgatgaattttattttcttagttcctctttctttcctcag-----------------
||| || ||||||||||||||||||||||| || || ||||||||| |||  | | |  || ||  | ||   | |||      | | |   | |||   |  || | |  || ||  | |||| |   | |  |||  | | | | ||| |    ||   | | | | ||  |   |    |  | ||| ||||  |  |     |  |||  ||||                  
TCTAAGCGAACTGCAAGTCCATTACAACAATGATCGTTCTAGgtaaaattaacctctcatccttagtacttacaaatgacattattggacaatttgtaagcatcaataatttttagggagttgtacttgcctttaaaagttatagtacaattaaacttca-gttcacaactcctcctttcttttgacttttttttaatcatcttgttgccttctctcaattgtatcctttatacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67016395|gb|CO445144.1|CO445144
EST:     TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG                         AGATTTCACAAATCCATCATTACCTACAGAACAACGTCCTAGGGCCTCT--
genomic: TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAGgtaatattgg ... ctttcctcagAGATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCA
EST: gi|31628085|gb|CD526434.1|CD526434
EST:     TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG                         AGATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCA
genomic: TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAGgtaatattgg ... ctttcctcagAGATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCA
EST: gi|30031872|gb|CB833723.1|CB833723
EST:     TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG                         AGATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCT--
genomic: TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAGgtaatattgg ... ctttcctcagAGATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCA
EST: gi|61118021|gb|DN558982.1|DN558982
EST:     TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG                         AGATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCA
genomic: TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAGgtaatattgg ... ctttcctcagAGATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCA
EST: gi|31360867|gb|CD445224.1|CD445224
EST:     TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG                         AGATTTCACAA-TCCATCATTACCTACA
genomic: TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAGgtaatattgg ... ctttcctcagAGATTTCACAAATCCATCATTACCTACA
EST: gi|33093651|gb|CF053645.1|CF053645
EST:     TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG                         AGATTTCACAAATCCATCATTACCTACAGAACAACGTCCTAGGGCCTCT--
genomic: TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAGgtaatattgg ... ctttcctcagAGATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCA
EST: gi|71436418|gb|DR817468.1|DR817468
EST:     TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG                         AGATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCA
genomic: TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAGgtaatattgg ... ctttcctcagAGATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCA
EST: gi|76011812|gb|DT938982.1|DT938982
EST:     TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG                         AGATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCA
genomic: TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAGgtaatattgg ... ctttcctcagAGATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCA
EST: gi|32915229|gb|CF020041.1|CF020041
EST:     TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG                         AGATTTCACAAATCCATCATTACCTACAGAACAACGTCCTAGGGCCTCT--
genomic: TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAGgtaatattgg ... ctttcctcagAGATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCA