1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GATAAGGTACTCAAACCATTAGGAGCTGTTACCACTGGAAGTCAATTCCTTGAGCCTGATGgtaatagcttgttgttttcttcatgcaattataataccttttgcttttctcccatttcttatacaccacatatttag
species | Zea mays |
transcript | GRMZM2G069676_T03 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CAAACCATTAGGAGCTGTTACCACTGGAAGTCAATTCCTTGAGCCTGATG GTTTGTTTCCCAATCACATTCCCAACCCTGAGGACAAAACCGCAATGAAGTEST: gi|60341753|gb|DN208726.1|DN208726
genomic: CAAACCATTAGGAGCTGTTACCACTGGAAGTCAATTCCTTGAGCCTGATGgtaatagctt ... acatatttagGTTTGTTTCCCAATCACATTCCCAACCCTGAGGACAAAACCGCAATGAAGT
EST: CAAACCATTAGGAGCTGTTACCACTGGAAGTCAATTCCTTGAGCCTGATG GTTTGTTTCCCAATCACATTCCCAACCCTGAGGACAAAACCGCAATGAAGTEST: gi|32832812|gb|CD972490.1|CD972490
genomic: CAAACCATTAGGAGCTGTTACCACTGGAAGTCAATTCCTTGAGCCTGATGgtaatagctt ... acatatttagGTTTGTTTCCCAATCACATTCCCAACCCTGAGGACAAAACCGCAATGAAGT
EST: CAAACCATTAGGAGCTGTTACCACTGGAAGTCAATTCCTTGAGCCTGATG GTTTGTTTCCCAATCACATTCCCAACCCTGAGGACAAAACCGCAATGAAGTEST: gi|33094155|gb|CF054149.1|CF054149
genomic: CAAACCATTAGGAGCTGTTACCACTGGAAGTCAATTCCTTGAGCCTGATGgtaatagctt ... acatatttagGTTTGTTTCCCAATCACATTCCCAACCCTGAGGACAAAACCGCAATGAAGT
EST: CAAACCATTAGGAGCTGTTACCACTGGAAGTCAATTCCTTGAGCCTGATG GTTTGTTTCCCAATCACATTCCCAACCCTGAGGACAAAACCGCAATGAAGT
genomic: CAAACCATTAGGAGCTGTTACCACTGGAAGTCAATTCCTTGAGCCTGATGgtaatagctt ... acatatttagGTTTGTTTCCCAATCACATTCCCAACCCTGAGGACAAAACCGCAATGAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATAAGGTACTCAAACCATTAGGAGCTGTTACCACTGGAAGTCAATTCCTTGAGCCTGATGgtaatagcttgttgttttcttcatgcaattataataccttttgcttttctcccatttcttatacaccacatatttag
- - - - - - - - - - GGAGCT
- - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - TGGAAG