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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCCAACCCTGAGGACAAAACCGCAATGAAGTTTATTACACAAGCAGTTCTTGATAACAAGGCAGACTTAGGCATCATATTTGATACTGATGTTGACAGgtacatatagctactctttgaggttctgctcatgtctaataggtcgtagtctaaaccatacagtttgcag

Basic information

species Zea mays
transcript GRMZM2G069676_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069676_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os07g26610.1 (Oryza sativa), 5'ss of exon 10
TTCCCAACCCTGAGGACAAAACCGCAATGAAGTTTATTACACAAGCAGTTCTTGATAACAAGGCAGACTTAGGCATCATATTTGATACTGATGTTGACAGgtacata-tagctactctttgaggttctgctcatgtctaataggtcgtagtctaaaccatacagtttgcag
|||| || |||||||||||||| ||||||||    ||||||||||| ||    ||||||||||||||||| |||||||||||||||||||||||||||||||| | | ||  ||  | ||||  || | |   |   ||||         |  |||   | | ||||||||
TTCCAAATCCTGAGGACAAAACTGCAATGAAAGCCATTACACAAGCTGTGGCCGATAACAAGGCAGACTTGGGCATCATATTTGATACTGATGTTGACAGgtataaaatatatagccattgaaattatacaggttcgtaatgcacaacccta-aaattgtgccgtttgcag

upper sequence: GRMZM2G069676_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA10G35490.2 (Glycine max), 5'ss of exon 9
TTCCCAACCCTGAGGACAAAACCGCAATGAAGTTTATTACACAAGCAGTTCTTGATAACAAGGCAGACTTAGGCATCATATTTGATACTGATGTTGACAGgta-----catatagcta------ctctttgaggtt-ctgctcatgtctaataggtcgtagtctaaaccatacagtttgcag
| || || |||||||||||||| ||||||||   ||| || |||||||| ||||||||||| || ||  | || || || |||||||||||||| ||||||||     | |||  |||       ||  ||||||  || ||  | |  |||   |        || |  |    | || ||
TCCCAAATCCTGAGGACAAAACAGCAATGAAAGCTATAACCCAAGCAGTCCTTGATAACAAAGCTGATCTTGGAATTATCTTTGATACTGATGTGGACAGgtaaggatcttattactaatcagtttcactgaggtgactactgtttttaaatttattaagcatcaatcactttcatctgtag

upper sequence: GRMZM2G069676_T02 (Zea mays), 5'ss of exon 9
lower sequence: AT5G17530.3 (Arabidopsis thaliana), 5'ss of exon 10
TTCCCAACCCTGAGGACAAAACCGCAATGAAGTTTATTACACAAGCAGTTCTTGATAACAAGGCAGACTTAGGCATCATATTTGATACTGATGTTGACAGgtacatatagctactctttgaggttctgctcatg-tctaataggtcgtagtctaaaccatacagtttgcag
| || || || || || ||  | |||||| |   ||| ||  | || ||||||||||| ||||| || || || ||||| ||||||||||||||||| |||||   |  ||  || | |  | | ||    |   | || ||| | |     || |        | || ||
TCCCTAATCCGGAAGATAAGGCGGCAATGGAAGCTATAACCAAGGCTGTTCTTGATAATAAGGCTGATTTGGGTATCATCTTTGATACTGATGTTGATAGgtagtaactgcagctatctctgttacttaggagaatttattagattgcctcttacaaagatttttgtgaag

upper sequence: GRMZM2G069676_T02 (Zea mays), 5'ss of exon 9
lower sequence: EFJ15375 (Selaginella moellendorffii), 5'ss of exon 8
TTCCCAACCCTGAGGACAAAACCGCAATGAAGTTTATTACACAAGCAGTTCTTGATAACAAGGCAGACTTAGGCATCATATTTGATACTGATGTTGACAGgtacatatagctactctttgaggttctgctcatgtctaataggtcgtagtctaaaccatacagtttgcag
||||||| ||||||||||| |  |||||| |     | |||   || |||||  |  ||||||| ||||| || ||||||||||| || |||||||||||||   | ||       |||  | |||    | |||    | ||  |||   |   |  || ||       
TTCCCAATCCTGAGGACAAGAAAGCAATGGAAGCCGTGACAAGTGCTGTTCTCAAGCACAAGGCGGACTTGGGGATCATATTTGACACGGATGTTGACAGgtttcttta-------ttttcgtttccatccttgttcttttggaagtaacttttgc-gtatag-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211441851|gb|FL182588.1|FL182588
EST:     CTTGATAACAAGGCAGACTTAGGCATCATATTTGATACTGATGTTGACAG                         GTCTGCGGCTGTTGATTCCA-GGGTCGTGAGTTGAATCGTAACCGATTGAT
genomic: CTTGATAACAAGGCAGACTTAGGCATCATATTTGATACTGATGTTGACAGgtacatatag ... cagtttgcagGTCTGCGGCTGTTGATTCCAGGGGTCGTGAGTTGAATCGTAACCGATTGAT
EST: gi|32933693|gb|CF038505.1|CF038505
EST:     CTTGATAACAAGGCAGACTTAGGCATCATATTTGATACTGATGTTGACAG                         GTCTGCGGCTGTTGATTCCAGGGGTCGTGAGTTGAATCGTAACCGATTGAT
genomic: CTTGATAACAAGGCAGACTTAGGCATCATATTTGATACTGATGTTGACAGgtacatatag ... cagtttgcagGTCTGCGGCTGTTGATTCCAGGGGTCGTGAGTTGAATCGTAACCGATTGAT
EST: gi|60341753|gb|DN208726.1|DN208726
EST:     CTTGATAACAAGGCAGACTTAGGCATCATATTTGATACTGATGTTGACAG                         GTCTGCGGCTGTTGATTCCAGGGGTCGTGAGTTGAATCGTAACCGATTGAT
genomic: CTTGATAACAAGGCAGACTTAGGCATCATATTTGATACTGATGTTGACAGgtacatatag ... cagtttgcagGTCTGCGGCTGTTGATTCCAGGGGTCGTGAGTTGAATCGTAACCGATTGAT
EST: gi|32832812|gb|CD972490.1|CD972490
EST:     CTTGATAACAAGGCAGACTTAGGCATCATATTTGATACTGATGTTGACAG                         GTCTGCGGCTGTTGATTCCAGGGGTCGTGAGTTGAATCGTAACCGATTGAT
genomic: CTTGATAACAAGGCAGACTTAGGCATCATATTTGATACTGATGTTGACAGgtacatatag ... cagtttgcagGTCTGCGGCTGTTGATTCCAGGGGTCGTGAGTTGAATCGTAACCGATTGAT
EST: gi|33094155|gb|CF054149.1|CF054149
EST:     CTTGATAACAAGGCAGACTTAGGCATCATATTTGATACTGATGTTGACAG                         GTCTGCGGCTGTTGATTCCAGGGGTCGTGAGTTGAATCGTAACCGATTGAT
genomic: CTTGATAACAAGGCAGACTTAGGCATCATATTTGATACTGATGTTGACAGgtacatatag ... cagtttgcagGTCTGCGGCTGTTGATTCCAGGGGTCGTGAGTTGAATCGTAACCGATTGAT