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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggctcagtgttgctgccactagtttaccgtatgtttttacttgctaagttgctaaccctggtcgagcttcatcag

Basic information

species Zea mays
transcript GRMZM2G068277_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G068277_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g02690.1 (Oryza sativa), 5'ss of exon 12
GTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggctcagtgttgctgccactagtttaccgtatgtttttacttgctaagttgctaaccctggtcgagcttcatcag
||||| |||||||| |||||||| |||||||||||||  || ||||| ||||| ||||| ||||| ||||||||||||||||| || ||||   |       |  | |       ||||||     |||    |||  ||||    |  | || ||    
GTTTCACGGTTGCGCGAGTACCAAGGTGTAGATCCACACTTTGATGTAATTGCAAGGCAATACCATGAGATTGTAAAGgtaatttgactcatcttcatcattatcaatgagtaccatgtttga---tgcatcattgacaacca-atttaaactgcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211432853|gb|FL453388.1|FL453388
EST:     TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG                         AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
genomic: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: gi|60400409|gb|DN233216.1|DN233216
EST:     TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG                         AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
genomic: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: gi|32788560|gb|CD940796.1|CD940796
EST:     GATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG                         AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
genomic: GATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: gi|211359393|gb|FL440514.1|FL440514
EST:     TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG                         AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
genomic: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: gi|71428336|gb|DR809386.1|DR809386
EST:     TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG                         AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
genomic: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: gi|60401584|gb|DN234391.1|DN234391
EST:     TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG                         AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
genomic: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: gi|71443220|gb|DR824270.1|DR824270
EST:     TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG                         AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
genomic: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: gi|32797207|gb|CD949443.1|CD949443
EST:     GTTCGATGTGATTGCAAGGCAGTACCACGAGATTGTAAAG                         AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
genomic: GTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: gi|76281959|gb|DV021527.1|DV021527
EST:     TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG                         AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
genomic: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: gi|78122195|gb|DV540579.1|DV540579
EST:     TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG                         AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
genomic: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: gi|32802117|gb|CD954353.1|CD954353
EST:     GATCCACGGTTCGATGTGATTGCAAGGCAGTACCACGAGATTGTAAAG                         AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
genomic: GATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: gi|50331676|gb|CO526802.1|CO526802
EST:     TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG                         AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
genomic: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: gi|32796987|gb|CD949223.1|CD949223
EST:     GATCCCCGGTTCGATGTGATTGCAAGGCAGTACCACGAGATTGTAAAG                         AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
genomic: GATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: gi|110488821|gb|EE012728.1|EE012728
EST:     TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG                         AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
genomic: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: gi|32806979|gb|CD959213.1|CD959213
EST:     GATCTACGGTTCGATGTGATTGCAAGGCAGTACCACGAGATTGTAAAG                         AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
genomic: GATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: gi|45568053|gb|CK985878.1|CK985878
EST:     TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG                         AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
genomic: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: gi|32797216|gb|CD949452.1|CD949452
EST:     GATCCACGGTTCGATGTGATTGCAAGGCAGTACCACGAGATTGTAAAG                         AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
genomic: GATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: gi|148948940|gb|EC894359.2|EC894359
EST:     TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG                         AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
genomic: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: gi|32797109|gb|CD949345.1|CD949345
EST:     GATCCGCGGTTCGATGTGATTGCAAGGCAGTACCACGAGATTGTAAAG                         AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
genomic: GATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: gi|110504829|gb|EE017437.1|EE017437
EST:     TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG                         AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
genomic: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: gi|60347346|gb|DN214319.1|DN214319
EST:     TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG                         AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
genomic: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: gi|50324448|gb|CO519574.1|CO519574
EST:     TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG                         AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
genomic: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: gi|211359065|gb|FL430712.1|FL430712
EST:     TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG                         AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
genomic: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: gi|44900277|gb|CK826822.1|CK826822
EST:     TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG                         AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
genomic: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: gi|5915607|gb|AW053248.1|AW053248
EST:     TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG                         AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
genomic: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: gi|211478808|gb|FL379717.1|FL379717
EST:     TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG                         AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
genomic: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: gi|74237081|gb|DT644995.1|DT644995
EST:     TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG                         AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
genomic: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA