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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCATCATCAAGAAGAAGTACGGTCAGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtccttatattttctctgcagctgttatagggaagggcagccattattatgcatatttttaagctatctagcatatttaagatgaccacgccata...

Basic information

species Zea mays
transcript GRMZM2G064302_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G064302_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os06g04510.2 (Oryza sativa), 5'ss of exon 7
AGCATCATCAAGAAGAAGTACGGTCAGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtccttatattttctctgcagctgttatagggaagggcagccattattatgc----atatttttaagct--atctagcatatttaagatgaccacgccata
|| || |||||||| ||||| || || ||||| |||||||| |||||||||||||| ||||| |||||||||||||||||   |    | | |||   | ||| | | ||  ||    |    |||  |||      ||||||| ||    ||||  |   |||   || |  | |     
AGTATAATCAAGAAAAAGTATGGCCAAGATGCCACAAATGTGGGGGATGAAGGTGGCTTTGCTCCTAACATTCAGgtaatcctccataaatctctgcacggctttca-agtcaataaaacttcttagaatgtcccagtattttttaggcaaatctgacgggtttctcattatgaag-----

upper sequence: GRMZM2G064302_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA16G32960.1 (Glycine max), 5'ss of exon 9
AGCATCATCAAGAAGAAGTACGGTCAGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtccttatattttctctgcagctgttatagggaagggcagccatta--ttatgcatatttttaagctatctagcatatttaagatgaccacgccata
    | || || ||||| ||||| |||||||| || || ||||| ||||||||||| ||||| ||||| || |||||  |  ||   || | |         || | || | |         | ||   ||||  | | |||     || ||||    |||   | | |     |||
GCTGTGATTAAAAAGAAATACGGACAGGATGCTACTAACGTTGGTGATGAAGGTGGCTTTGCTCCTAATATCCAGgtccttaccagctactcttggctttagtgatctaagcattatttaaaagtaatctatgattttctttcttgcatttagccggatta--tttatctgtgtata

upper sequence: GRMZM2G064302_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA09G28100.1 (Glycine max), 5'ss of exon 9
AGCATCATCAAGAAGAAGTACGGTCAGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaat--gtccttatattttctctgcagctgttatagggaagggcagccattattatgcatatttttaagctatctagcat--atttaagatgaccacgccata
    | || || ||||| |||||||||||||| || || ||||| ||||||||||| ||||| ||||| || |||||  |  |    || | |||   |     || | || | |         |   | || |||  ||||    |  || ||||  |  | |  |    | |  || 
GCTGTTATTAAAAAGAAATACGGTCAGGATGCTACTAACGTTGGTGATGAAGGTGGCTTTGCTCCTAATATCCAGgtccttagcagctacaattttggttttagtgatctaagcattatt--ttaaagtaatccatgatttttttttg-cttgcattgagctgaattatttatgtaat-

upper sequence: GRMZM2G064302_T01 (Zea mays), 5'ss of exon 9
lower sequence: Vv16s0022g01770.t01 (Vitis vinifera), 5'ss of exon 9
AGCATCATCAAGAAGAAGTACGGTCAGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtccttatattttctctgcagctgttatagggaagggcagccattattatgcatatttttaagctatctag-catatttaagatgaccacgccata-
    | || ||||| ||||| ||||| ||||| || |||||||| ||||||||||| ||||| || || ||||||||   ||  ||     |||  |  |    || |  |          |||  ||     |      ||||||| | | || ||  |||   |     | ||  
TCTGTAATTAAGAAAAAGTATGGTCAAGATGCAACCAATGTTGGTGATGAAGGTGGCTTTGCTCCCAATATTCAGgtt-cgtaattgctcattcattata-tcattctgagattttcatttcatgcttgaagcttgaagaaagctatatggtcaaatcaaaggctaatggtctattc

upper sequence: GRMZM2G064302_T01 (Zea mays), 5'ss of exon 9
lower sequence: PP1S1_527V6.1 (Physcomitrella patens), 5'ss of exon 9
AGCATCATCAAGAAGAAGTACGGTCAGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgta-atgtccttatattttctctgcagctgttatagggaagggcagccattattatgcatatttttaagctatcta-gcatatttaagatgaccacgccata
    | ||||||||||||||||| || ||||| || || ||||||||||| ||||||||||| ||||||||||||||      |||  | ||   | ||    |    |  |   | |      ||| | |    |   | |||| |  ||  ||    ||| |     |   |   
GCTGTGATCAAGAAGAAGTACGGACAAGATGCCACCAACGTTGGGGATGAGGGTGGTTTTGCTCCTAACATTCAGgtgtgcaccctagttttggatatgtcattaccgtttgtgtgag--agtgttactttttcgaacgtcaagcaaagtacacaaccgtaaaacagtgaaaacggg

upper sequence: GRMZM2G064302_T01 (Zea mays), 5'ss of exon 9
lower sequence: PP1S1_526V6.1 (Physcomitrella patens), 5'ss of exon 9
AGCATCATCAAGAAGAAGTACGGTCAGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtccttatattttctctgcagctgtt-atagggaagggcagccattattatgc-atatttttaagctatctagcatattta-agatgaccacgccata
    | || ||||| ||||| || || ||||| ||||| ||||| ||||| |||||||| || ||||||||||||||     ||  |  |||          | |  || |     |     || | || ||   ||  ||  |||  |     |  | |  ||||| |         
GCTGTAATTAAGAAAAAGTATGGACAAGATGCTACAAACGTTGGTGATGAGGGTGGTTTCGCTCCTAACATTCAGgtttctaccacaagtttctggatttattatcgatggactttgttcaacaatgttttgttgtagcttggagccttgcgtgaactctgcagatgtcagtttg---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31355773|gb|CD440130.1|CD440130
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|31354199|gb|CD438556.1|CD438556
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATA
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATA
EST: gi|148946585|gb|EC890118.2|EC890118
EST:     AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAAGCCTTGAACTATTGAAAGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|67022470|gb|CO451219.1|CO451219
EST:     GGTGGTTTTGCACCTAACATTCA-                         G-AAACAAACAA-GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: GGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|61117624|gb|DN558585.1|DN558585
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|67024719|gb|CO453468.1|CO453468
EST:     AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|67017386|gb|CO446135.1|CO446135
EST:     AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|67013116|gb|CO441865.1|CO441865
EST:     AGGATGCGACAAATGTTGGGGATGAAAGTGGTTNTGCACCTAACATTCAG                         GAAAACAA-GAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|31349718|gb|CD434075.1|CD434075
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGT
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|32920851|gb|CF025663.1|CF025663
EST:     AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|67013379|gb|CO442128.1|CO442128
EST:     AGGATGCGACAAA-GTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|67012265|gb|CO441014.1|CO441014
EST:     AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|84980220|gb|DW530569.1|DW530569
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|67024944|gb|CO453693.1|CO453693
EST:     AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|148986420|gb|EE030161.2|EE030161
EST:     AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|87152414|gb|DY397203.1|DY397203
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|32907047|gb|CF011860.1|CF011860
EST:     CGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: CGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|211023765|gb|FL452149.1|FL452149
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|19770130|gb|BQ034851.1|BQ034851
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|67018586|gb|CO447335.1|CO447335
EST:     AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|67016127|gb|CO444876.1|CO444876
EST:     AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAAGCCTTGAACTATTGAAGGGCAGCCATAGAAAAG-CTGG
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGG-CAGCCATAGAAAAGGCTGG
EST: gi|9028626|gb|BE238666.1|BE238666
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|67024424|gb|CO453173.1|CO453173
EST:     AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|31362399|gb|CD446756.1|CD446756
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAAGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|67019052|gb|CO447801.1|CO447801
EST:     GGATGCGACAAATGTTGGGGATGAAAGTGGTTTTGCACCCTA-CATTCAG                         GAAAACAAAGAAAGCCTTGGACTATTGAAGGCAGCC-TANAAAAGGCTGGC
genomic: GGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACC-TAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|31355712|gb|CD440069.1|CD440069
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|31353289|gb|CD437646.1|CD437646
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|67016019|gb|CO444768.1|CO444768
EST:     AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|32940038|gb|CF044857.1|CF044857
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|18963407|gb|BM660418.1|BM660418
EST:     GGATGCGACATAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: GGATGCGACA-AATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|32910676|gb|CF015488.1|CF015488
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|67016246|gb|CO444995.1|CO444995
EST:     GGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCNTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: GGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACC-TAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|67015460|gb|CO444209.1|CO444209
EST:     AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|56382692|gb|CV985361.1|CV985361
EST:     GGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: GGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|31353228|gb|CD437585.1|CD437585
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|67026148|gb|CO454897.1|CO454897
EST:     AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAN                         GAAAACAAAGAAGGNCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTG-C
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|67010878|gb|CO439627.1|CO439627
EST:     GGTGGTTTTGCACCTAACATTCA-                         GAAAAC-AACAA-GCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: GGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|19822768|gb|BQ048792.1|BQ048792
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|32846178|gb|CD985859.1|CD985859
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|31356461|gb|CD440818.1|CD440818
EST:     TGCACCTAACATTCAG                         GAAAACCTCTAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: TGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|61117627|gb|DN558588.1|DN558588
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|149010075|gb|EE041882.2|EE041882
EST:     AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|33102962|gb|CF062922.1|CF062922
EST:     AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|67012612|gb|CO441361.1|CO441361
EST:     AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|32863251|gb|CF002933.1|CF002933
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|31364479|gb|CD448834.1|CD448834
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|67021068|gb|CO449817.1|CO449817
EST:     AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAATAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|61117628|gb|DN558589.1|DN558589
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|6194916|gb|AW147020.1|AW147020
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|24768145|gb|CA403274.1|CA403274
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|31355823|gb|CD440180.1|CD440180
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|32848724|gb|CD988405.1|CD988405
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|67024837|gb|CO453586.1|CO453586
EST:     AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGTAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|67014200|gb|CO442949.1|CO442949
EST:     AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|67016423|gb|CO445172.1|CO445172
EST:     GCGACAAA-GTTGGGGATGAA-GTGGTTTTGCACCTAACATTCA-                         GAAAACAAANAA-GCCTTGAACTATTGAAGGCAGCCATAGAAAA-GCTGGC
genomic: GCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|67013081|gb|CO441830.1|CO441830
EST:     AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|31351789|gb|CD436146.1|CD436146
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|61117626|gb|DN558587.1|DN558587
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|33100707|gb|CF060667.1|CF060667
EST:     AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|32919805|gb|CF024617.1|CF024617
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|31359190|gb|CD443547.1|CD443547
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|22489824|gb|BU049747.1|BU049747
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|78079386|gb|DV507798.1|DV507798
EST:     AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|6696011|gb|AW289119.1|AW289119
EST:     AGGATGCGACAAACGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|67016450|gb|CO445199.1|CO445199
EST:     AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|67015291|gb|CO444040.1|CO444040
EST:     AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
EST: gi|67035313|gb|CO463846.1|CO463846
EST:     AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAG                         GAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC
genomic: AGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtcct ... atatatgcagGAAAACAAAGAAGGCCTTGAACTATTGAAGGCAGCCATAGAAAAGGCTGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCATCATCAAGAAGAAGTACGGTCAGGATGCGACAAATGTTGGGGATGAAGGTGGTTTTGCACCTAACATTCAGgtaatgtccttatattttctctgcagctgttatagggaagggcagccattattatgcatatttttaagctatctagcatatttaagatgaccacgccata

- - - - - - - - - - - -  AGGATG