1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCTTACGATCAGGCATCCCAGTTTAAAAATGTTAGTTCTGGGTGGAATGGTCAAGCTGCCAACCCTGTTGTGCCCCTGCCAGAGCAAGCACTGAATTACGgtatgtcaggaattctcatctctactttgctgttatatctttctgaagtgctacttaatcattagtggttttttcagtgtgcacttttctgtctttcaatcagaactctctgtattcatatgaatcttcttttctgcccgaagaaaaaaaagtgatgatagtatccaaactctgtag
species | Zea mays |
transcript | GRMZM2G062953_T02 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCAAGCTGCCAACCCTGTTGTGCCCCTGCCAGAGCAAGCACTGAATTACG ATGATCAAAGTGGAAACCTTCCACCGCCTCCTTGGGAGGCTCACCCAGCGTEST: gi|19821886|gb|BQ047910.1|BQ047910
genomic: TCAAGCTGCCAACCCTGTTGTGCCCCTGCCAGAGCAAGCACTGAATTACGgtatgtcagg ... aactctgtagATGATCAAAGTGGAAACCTTCCACCGCCTCCTTGGGAGGCTCAGCCAGCGT
EST: TCAAGCTGCCAACCCTGCTGTGCCCCTGCCAGAGCAAGCACTGAATTACG ATGATCAAAGTGGAAACCTTCCACCGCCTCCTTGGGAGGCTCAGCCAGCGTEST: gi|30160651|gb|CB924380.1|CB924380
genomic: TCAAGCTGCCAACCCTGTTGTGCCCCTGCCAGAGCAAGCACTGAATTACGgtatgtcagg ... aactctgtagATGATCAAAGTGGAAACCTTCCACCGCCTCCTTGGGAGGCTCAGCCAGCGT
EST: TCAAGCTGCCAACCCTGTTGTGCCCCTGCCAGAGCAAGCACTGAATTACG ATGATCAAAGTGGAAACCTTCCACCGCCTCCTTGGGAGGCTCAGCCAGCGTEST: gi|71764440|gb|DR962377.1|DR962377
genomic: TCAAGCTGCCAACCCTGTTGTGCCCCTGCCAGAGCAAGCACTGAATTACGgtatgtcagg ... aactctgtagATGATCAAAGTGGAAACCTTCCACCGCCTCCTTGGGAGGCTCAGCCAGCGT
EST: TCAAGCTGCCAACCCTGTTGTGCCCCTGCCAGAGCAAGCACTGAATTACG ATGATCAAAGTGGAAACCTTCCACCGCCTCCTTGGGAGGCTCAGCCAGCGTEST: gi|71438882|gb|DR819932.1|DR819932
genomic: TCAAGCTGCCAACCCTGTTGTGCCCCTGCCAGAGCAAGCACTGAATTACGgtatgtcagg ... aactctgtagATGATCAAAGTGGAAACCTTCCACCGCCTCCTTGGGAGGCTCAGCCAGCGT
EST: TCAAGCTGCCAACCCTGTTGTGCCCCTGCCAGAGCAAGCACTGAATTACG ATGATCAAAGTGGAAACCTTCCACCGCCTCCTTGGGAGGCTCAGCCAGCGT
genomic: TCAAGCTGCCAACCCTGTTGTGCCCCTGCCAGAGCAAGCACTGAATTACGgtatgtcagg ... aactctgtagATGATCAAAGTGGAAACCTTCCACCGCCTCCTTGGGAGGCTCAGCCAGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTACGATCAGGCATCCCAGTTTAAAAATGTTAGTTCTGGGTGGAATGGTCAAGCTGCCAACCCTGTTGTGCCCCTGCCAGAGCAAGCACTGAATTACGgtatgtcaggaattctcatctctactttgctgttatatctttctgaagtgctacttaatcattagtggttttttcagtgtgcacttttctgtctttcaatcagaactctctgtattcatatgaatcttcttttctgcccgaagaaaaaaaagtgatgatagtatccaaactctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG