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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACATGGTTCAAAAGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAGgtacgtttacggatgttttccagctcatttagatgtgaagagattttttcccggttgagttgagggggtggggcacatcagctttaacagaaaatgtaat...

Basic information

species Zea mays
transcript GRMZM2G060977_T05
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G060977_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g71770.1 (Oryza sativa), 5'ss of exon 8
GAACATGGTTCAAAAGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAGgtacgtttacggatgttttccagc--tcatttagatgtgaaga--gattttttcccggttgagttgagggggtggggcacatcagctttaacagaaaatgtaat
|||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||||||| | ||  |  |||| |  | ||| ||  ||  |     |||| ||   ||   ||   |     | |   | || ||  || |   |   | ||| 
GAACATGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTGCAGgtacgtttgcagaaatcctccatcatttattcaggcgttcattttaatttgttgttggggaagaataattt-tagcatagatgagtcttcattta---tataaa

upper sequence: GRMZM2G060977_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv07s0031g00600.t01 (Vitis vinifera), 5'ss of exon 8
GAACATGGTTCAAAAGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAGgtacgtttacgg-atgttttccagctcatttagatgtgaagagattttttcccggttgagttgagggggtggggcacatcagctttaacagaaa-atgta-at
|| ||||| |||||||||||||||||||||||||||||||| |||   |||||||||   | ||    |  ||||||    ||  |   | | || |   ||||    | |  |  | |          |   ||  |||| |||     ||||  ||
GATCATGGATCAAAAGGGCATCGTGGAATTGGGTTTATCACATTTGCAAGTGCAGgtcaatatattttaaattttccttggcaccttatttttaata---ttttgaatgatgcaagtaatttttcttttcttttcttctttgacaacctcatgttcat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78107954|gb|DV526372.1|DV526372
EST:     TGGTTCAAAAGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAG                         AGTCTGTGGACAACATCATGCAAGAGTCACATGAGCTTGATGGTACAACAG
genomic: TGGTTCAAAAGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAGgtacgtttac ... aattaaatagAGTCTGTGGACAACATCATGCAAGAGTCACATGAGCTTGATGGTACAACAG
EST: gi|19058249|gb|BM736916.1|BM736916
EST:     TGGTTCAAAAGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAG                         AGTCTGTGGACAACATCATGCAAGAGTCACATGAGCTTGATGGTCACA-CA
genomic: TGGTTCAAAAGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAGgtacgtttac ... aattaaatagAGTCTGTGGACAACATCATGCAAGAGTCACATGAGCTTGATGGT-ACAACA
EST: gi|113702665|gb|EE680169.1|EE680169
EST:     AATTGGGTTTTTCACGTTTCAGAGTGCAG                         AGT-TGGTGGACAACATCATGCAAGAGTCACATGAGCTTGATGGTACAACA
genomic: AATTGGGTTTATCACGTTTCAGAGTGCAGgtacgtttac ... aattaaatagAGTCT-GTGGACAACATCATGCAAGAGTCACATGAGCTTGATGGTACAACA
EST: gi|22490712|gb|BU050635.1|BU050635
EST:     TGGTTCAAAAGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAG                         AGTCTGTGGACAACATCATGCAAGAGTC-CATGAGCTTGATGGTACA-CAG
genomic: TGGTTCAAAAGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAGgtacgtttac ... aattaaatagAGTCTGTGGACAACATCATGCAAGAGTCACATGAGCTTGATGGTACAACAG