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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCTACACATTCATTATCAATCTTATCCCAATGCATGTCCTCTTGTGCATTGTAACTGGTCGTTATTCTTCGCGTCTCTACATTGCATATGCTCCCCTTgtgagtgaataagcttcctctggttggcgcaatcttctttccagagtgttgtccagaactataacttaccagatccatggatcattttgtag

Basic information

species Zea mays
transcript GRMZM2G060611_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G060611_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os05g44360.2 (Oryza sativa), 5'ss of exon 4
AGGCTACACATTCATTATCAATCTTATCCCAATGCATGTCCTCTTGTGCATTGTAACTGGTCGTTATTCTTCGCGTCTCTACATTGCATATGCTCCCCTTgtgagtgaataagcttcctctggttggcgcaatcttctttccagagtgttgtccagaactataacttaccagatccatggatcattttgtag-------------------------------
||| ||||||||||| ||||| ||||| ||||| ||||| || ||||||||||| ||||||||||||||||| || || |||||||| |||||||||||||| |||| |||| | || ||   ||    |    || |   || |         || | |  ||| |  |||    |  | |  | | | |                                
AGGTTACACATTCATCATCAACCTTATTCCAATTCATGTACTGTTGTGCATTGTCACTGGTCGTTATTCTTCACGGCTTTACATTGCTTATGCTCCCCTTgtaagtgcataa-catcatccttttctttcttcattttgaacaaacaaaataaaaggagttaaacgtttcagtgatactgtttgtctggaaactgacctaataagataattatcattttgcag

upper sequence: GRMZM2G060611_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA01G01270.1 (Glycine max), 5'ss of exon 9
AGGCTACACATTCATTATCAATCTTATCCCAATGCATGTCCTCTTGTGCATTGTAACTGGTCGTTATTCTTCGCGTCTCTACATTGCATATGCTCCCCTTgtgagtgaataagct--tcctctggttggcgcaatcttctttccagagtgttgtcca-----gaactataacttaccagatccatggatcattttgtag-----------------------------------------------------
||| ||||| || || || |||||||| || |||||||| ||||||||||| ||||| ||||| |||||||| || || |||||||||||||| || ||||| |||   |       || |   |||     |   ||      | |   ||  ||       |     || ||   |    ||| |  |||    | |                                                     
AGGGTACACTTTTATCATTAATCTTATTCCGATGCATGTACTCTTGTGCATAGTAACCGGTCGCTATTCTTCTCGACTGTACATTGCATATGCACCTCTTgtaagtatctgtttcagtcatacagttatgttagagtttaaataaaaacatttgcctttttcaattggaaagttgaaatgcacatagtacataacttgggcttgatactgtaagctgtaatttgaaatgtgcacttgattttctgaatgcag

upper sequence: GRMZM2G060611_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA16G08410.1 (Glycine max), 5'ss of exon 9
AGGCTACACATTCATTATCAATCTTATCCCAATGCATGTCCTCTTGTGCATTGTAACTGGTCGTTATTCTTCGCGTCTCTACATTGCATATGCTCCCCTTgtgagtgaataagct--tcctctggttggcgcaatcttctttccagagtgttgtcca-----gaactataacttaccagatccatggatcattttgtag-
||| ||||| || || || |||||||| ||||||||||| ||||||||||| ||||||||||| |||||||| || || |||||||||||||| || ||||| |||   |       || |   |||     |   ||      |     ||  ||       |     || ||   |    ||| |  |||    | | 
AGGGTACACTTTTATCATTAATCTTATTCCAATGCATGTTCTCTTGTGCATAGTAACTGGTCGCTATTCTTCTCGACTGTACATTGCATATGCACCTCTTgtaagtatctgtttcagtcatacagttatattagagtttaaataaatacatttgcctttttcaattggaaatttgaaatgcacatagtacataccttggg

upper sequence: GRMZM2G060611_T01 (Zea mays), 5'ss of exon 9
lower sequence: AT5G19690.1 (Arabidopsis thaliana), 5'ss of exon 9
AGGCTACACATTCATTATCAATCTTATCCCAATGCATGTCCTCTTGTGCATTGTAACTGGTCGTTATTCTTCGCGTCTCTACATTGCATATGCTCCCCTTgtgagtgaataagcttcctctggttggcgcaatcttctttccagagtgttgtccagaactataacttaccagatccatggatcattttgtag-------------------------------------------------------------
||| ||||| |||||||||||||| || |||||||| || || ||||||||||||||||| || || ||| | || || |||||||| ||||||||  | || ||  |||   ||||||   |  | |  |      ||   | |       | | | |  ||  |    | ||| | | |  ||  || |                                                              
AGGTTACACCTTCATTATCAATCTGATACCAATGCACGTGCTTTTGTGCATTGTAACTGGGCGATACTCTCCCCGACTGTACATTGCCTATGCTCCTTTGgtaag--aatcttcttccttctggagacagataaaaattattataaca--acctataccagtagttgtatatatc-acgtaggatgctgaaagatagctaaaattacataatactgaaagttattgacaccaggtttgctcatgcgtatgcag

upper sequence: GRMZM2G060611_T01 (Zea mays), 5'ss of exon 9
lower sequence: Vv11s0016g03320.t01 (Vitis vinifera), 5'ss of exon 9
AGGCTACACATTCATTATCAATCTTATCCCAATGCATGTCCTCTTGTGCATTGTAACTGGTCGTTATTCTTCGCGTCTCTACATTGCATATGCTCCCCTTgtgagtgaataa-gcttcctctggttggcgcaatcttctttc-----cagagtgttgtccagaactataacttaccagatccatggatcattttgtag----
||| ||||| || |||||||| ||||| ||||||||||| ||  | ||||| ||||||||||| |||||||| || || |||||||| |||||||| ||||| |||   |   || || |   | | |   | || | |        || | | | ||    || ||| |   |  | | | |    | || |||| |    
AGGATACACTTTTATTATCAACCTTATTCCAATGCATGTGCTTCTTTGCATAGTAACTGGTCGCTATTCTTCTCGACTTTACATTGCGTATGCTCCTCTTgtaagtacttgctgcatcatgaagattggaaagtcatttaaggcaaacaaaatat-gtatctaagtatcagagattaaaac-acaagttatattgttgggct