1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CTCCGATTCCGCCCGCGTCCGCGGACCCAGATCCGGCGCCCGCGCCCATGGCGACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACAGCGGgtgcggccggctccctgtccctttccataccggacctctttttgttttgtttttttttcctgttcgttcgtttgcttgcttgcttgcgccggttcctcactgaccccctggtgcgtctccttgttcgcag
species | Zea mays |
transcript | GRMZM2G058366_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCGACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACAGCGG GGTCGGCAAGACCTCGCTGATGAACCAEST: gi|211158731|gb|FL327701.1|FL327701
genomic: GCGACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACAGCGGgtgcggccgg ... ttgttcgcagGGTCGGCAAGACCTCGCTGATGAACCA
EST: ACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACAGCGG GGTCGGCAAGACCTCGCTGATGAACCAEST: gi|211340444|gb|FL354255.1|FL354255
genomic: ACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACAGCGGgtgcggccgg ... ttgttcgcagGGTCGGCAAGACCTCGCTGATGAACCA
EST: G-SACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACASSGG GGTCGGCAAGA-CTCGCTGATGAACCAEST: gi|211435902|gb|FL357604.1|FL357604
genomic: GCGACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACAGCGGgtgcggccgg ... ttgttcgcagGGTCGGCAAGACCTCGCTGATGAACCA
EST: GCGACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACA-SGG GGTCGGCAAGACCTCGCTGATGAACCAEST: gi|20803409|gb|BQ294459.1|BQ294459
genomic: GCGACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACAGCGGgtgcggccgg ... ttgttcgcagGGTCGGCAAGACCTCGCTGATGAACCA
EST: GCGACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACAGCGG GGTCGGCAAGACCTCGCTGATGAACCAEST: gi|211522124|gb|FL314742.1|FL314742
genomic: GCGACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACAGCGGgtgcggccgg ... ttgttcgcagGGTCGGCAAGACCTCGCTGATGAACCA
EST: GSGACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACAGCGG GGTCGGCAAGACCTCGCTGATGAACCAEST: gi|15100485|gb|BI396276.1|BI396276
genomic: GCGACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACAGCGGgtgcggccgg ... ttgttcgcagGGTCGGCAAGACCTCGCTGATGAACCA
EST: GCGACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACAGCGG GGTCGGCAAGACCTCGCTGATGAACCAEST: gi|60353761|gb|DN220734.1|DN220734
genomic: GCGACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACAGCGGgtgcggccgg ... ttgttcgcagGGTCGGCAAGACCTCGCTGATGAACCA
EST: GCGACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACAGCGG GGTCGGCAAGACCTCGCTGATGAACCAEST: gi|211093130|gb|FL308874.1|FL308874
genomic: GCGACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACAGCGGgtgcggccgg ... ttgttcgcagGGTCGGCAAGACCTCGCTGATGAACCA
EST: ACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACAGCGG GGTCGGCAAGACCTCGCTGATGAACCAEST: gi|211267809|gb|FL345566.1|FL345566
genomic: ACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACAGCGGgtgcggccgg ... ttgttcgcagGGTCGGCAAGACCTCGCTGATGAACCA
EST: GCGACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACAGCGG GGTCGGCAAGACCTCGCTGATGAACCAEST: gi|211403760|gb|FL312287.1|FL312287
genomic: GCGACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACAGCGGgtgcggccgg ... ttgttcgcagGGTCGGCAAGACCTCGCTGATGAACCA
EST: ACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACAGCGG GGTCGGCAAGACCTCGCTGATGAACCAEST: gi|149062811|gb|EE157528.2|EE157528
genomic: ACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACAGCGGgtgcggccgg ... ttgttcgcagGGTCGGCAAGACCTCGCTGATGAACCA
EST: GCGACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACAGCGG GGTCGGCAAGACCTCGCTGATGAACCAEST: gi|211495186|gb|FL341359.1|FL341359
genomic: GCGACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACAGCGGgtgcggccgg ... ttgttcgcagGGTCGGCAAGACCTCGCTGATGAACCA
EST: GCGACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACAGCGG GGTCGGCAAGACCTCGCTGATGAACCAEST: gi|211477104|gb|FL313896.1|FL313896
genomic: GCGACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACAGCGGgtgcggccgg ... ttgttcgcagGGTCGGCAAGACCTCGCTGATGAACCA
EST: G-SACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACA-SGG GGTCGGCAAGA-CTCGCTGATGAACCAEST: gi|211165712|gb|FL359024.1|FL359024
genomic: GCGACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACAGCGGgtgcggccgg ... ttgttcgcagGGTCGGCAAGACCTCGCTGATGAACCA
EST: GCGACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACASCGG GGTCGGCAAGACCTCGCTGATGAACCA
genomic: GCGACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACAGCGGgtgcggccgg ... ttgttcgcagGGTCGGCAAGACCTCGCTGATGAACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCGATTCCGCCCGCGTCCGCGGACCCAGATCCGGCGCCCGCGCCCATGGCGACGCGCAGGCGAATGCTCCTCAAGGTCATCATCCTCGGCGACAGCGGgtgcggccggctccctgtccctttccataccggacctctttttgttttgtttttttttcctgttcgttcgtttgcttgcttgcttgcgccggttcctcactgaccccctggtgcgtctccttgttcgcag
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