1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CGATCTTAGATGGAGATCGCTGAACGGTCCGTTCGTTTCAGTCTGGCTCGGCAATGTTCCTTTCGCTAGCGAAGATGCCATGGCAGCACCAAAAGCAGAGgtcggtcagtctctcgccgttccgtgccccgcggttccactgcgctccatatagctttgaccctttcttgtttgttgccatgcag
species | Zea mays |
transcript | GRMZM2G057475_T04 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TGCCATGGCAGCACCAAAAGCAGAG TTTGCGGATGGCTACTTGGATGCTGCTATAATCAAGGACTGCCCGCGGTGGEST: gi|78089440|gb|DV517814.1|DV517814
genomic: TGCCATGGCAGCACCAAAAGCAGAGgtcggtcagt ... tgccatgcagTTTGCGGATGGCTACTTGGATGCTGCTATAATCAAGGACTGCCCGCGGTGG
EST: TGTTCCTTTCGCTAGCGAAGATGCCATGGCAGCACCAAAAGCAGAG TTTGCGGATGGCTACTTGGATGCTGCTATAATCAAGGACTGCCCGCGGTGGEST: gi|67017796|gb|CO446545.1|CO446545
genomic: TGTTCCTTTCGCTAGCGAAGATGCCATGGCAGCACCAAAAGCAGAGgtcggtcagt ... tgccatgcagTTTGCGGATGGCTACTTGGATGCTGCTATAATCAAGGACTGCCCGCGGTGG
EST: TCGTTTCAGTCTGGCTCGGCAATGTTCCTTTCGCTAGCGAAGATGCCATGGCAGCACCAAAAGCAGAGEST: gi|71309966|gb|DR791266.1|DR791266
genomic: GCAATGTTCCTTTCGCTAGCGAAGATGCCATGGCAGCACCAAAAGCAGAGgtcggtcagt ... tgccatgcagT
EST: CCATGGCAGCACCAAAAGCAGAG TTTGCGGAT-GCTACTTTGGATGCTGCTATAATCAAGGACTGCCCGCGGTGEST: gi|71441279|gb|DR822329.1|DR822329
genomic: CCATGGCAGCACCAAAAGCAGAGgtcggtcagt ... tgccatgcagTTTGCGGATGGCTAC-TTGGATGCTGCTATAATCAAGGACTGCCCGCGGTG
EST: CTAGCGAAGATGCCATGGCAGCACCAAAAGCAGAG TTTGCGGATGGCTACTTGGATGCTGCTATAATCAAGGACTGCCCGCGGTGGEST: gi|14206828|gb|BG840506.1|BG840506
genomic: CTAGCGAAGATGCCATGGCAGCACCAAAAGCAGAGgtcggtcagt ... tgccatgcagTTTGCGGATGGCTACTTGGATGCTGCTATAATCAAGGACTGCCCGCGGTGG
EST: GCAATGTTCCTTTCGCTAGCGAAGATGCCATGGCAGCACCAAAAGCAGAG TTTGCGGATGGCTACTTGGATGCTGCTATAATCAAGGACTGCCCGCGGTGGEST: gi|78023377|gb|DV491764.1|DV491764
genomic: GCAATGTTCCTTTCGCTAGCGAAGATGCCATGGCAGCACCAAAAGCAGAGgtcggtcagt ... tgccatgcagTTTGCGGATGGCTACTTGGATGCTGCTATAATCAAGGACTGCCCGCGGTGG
EST: GATGCCATGGCAGCACCAAAAGCAGAG TTTGCGGATGGCTACTTGGATGCTGCTATAATCAAGGACTGCCCGCGGTGG
genomic: GATGCCATGGCAGCACCAAAAGCAGAGgtcggtcagt ... tgccatgcagTTTGCGGATGGCTACTTGGATGCTGCTATAATCAAGGACTGCCCGCGGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGATCTTAGATGGAGATCGCTGAACGGTCCGTTCGTTTCAGTCTGGCTCGGCAATGTTCCTTTCGCTAGCGAAGATGCCATGGCAGCACCAAAAGCAGAGgtcggtcagtctctcgccgttccgtgccccgcggttccactgcgctccatatagctttgaccctttcttgtttgttgccatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG