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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGTTATTGAAGCACATTATTTATTTGGTGCTGAATATGATGACATTGAGATTGTGATTCACCCACAGTCTATCATACACTCTATGGTTGAAACCCAGgtgagccctaaaccatagttatatgttttactaaaaagcacatgttgaggtattctgcccagatgtagtgcttcatacactgaaacatatccaaacttaa...

Basic information

species Zea mays
transcript GRMZM2G056975_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G056975_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g01710.1 (Oryza sativa), 5'ss of exon 9
AGAAGTTATTGAAGCACATTATTTATTTGGTGCTGAATATGATGACATTGAGATTGTGATTCACCCACAGTCTATCATACACTCTATGGTTGAAACCCAGgtgagccctaaaccatagttatatgttttactaaaaagcacatgttgaggtattctgcccagatgtagtgcttcatacactga-aacatatccaaacttaa----------------------------------------------------------------------------------
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||||| |||||||||||||||| |||| | || || |||               | | ||||| ||   || ||| ||  || ||||  |  || ||||  ||   || || ||||||                                                                                  
AGAAGTTATTGAAGCACATTATTTATTTGGTGCTGAATACGATGACATTGAAATTGTGATCCACCCACAATCTATCATACACTCTATGATTGAAACCCAGgtgagtcctacagcacagctatg--------------gaaaatgtttagcggttatgctcaactgcagtggattttaaactgttaatgcatgcacacttaatcctgatatggcaaccgtattttcatgtttacgtttggcttaatattttttttcaagtattcatgaagttctgtttctccag

upper sequence: GRMZM2G056975_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA05G02190.1 (Glycine max), 5'ss of exon 9
AGAAGTTATTGAAGCACATTATTTATTTGGTGCTGAATATGATGACATTGAGATTGTGATTCACCCACAGTCTATCATACACTCTATGGTTGAAACCCAGgtgagccctaaaccatagttatatgttttactaaaaagcacatgttgaggtat-tctgcccagatgtag-tgcttcatacactgaaacatatccaaacttaa----
|||||| |||||||||||||| || ||||| ||||| || ||| | ||||||||||| ||||| ||||| || |||||||| || ||| ||||||| |||||     ||||| | || || |||||| |  |    | | ||| || |  |   | |     |||| |  ||  | |   ||   |  |  | ||| ||  |    
AGAAGTAATTGAAGCACATTACTTGTTTGGAGCTGACTACGATCATATTGAGATTGTCATTCATCCACAATCAATCATACATTCAATGATTGAAACACAGgt-----ctaaatc-taattctatgttatgttggttaccgcattttaatatccatatatttggatgcaaatggatgaggaaccatagtacctacaagctacaagtt

upper sequence: GRMZM2G056975_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA17G09740.1 (Glycine max), 5'ss of exon 9
AGAAGTTATTGAAGCACATTATTTATTTGGTGCTGAATATGATGACATTGAGATTGTGATTCACCCACAGTCTATCATACACTCTATGGTTGAAACCCAGgtg--agccctaaaccatagttatatgttttactaaaaagcacatgttgaggtattctgcc-cagatg--tagtgcttcatacactgaaacatatccaaacttaa-
|||||| |||||||||||||| || ||||| ||||| |||||| | ||||||||||| ||||| ||||| || |||||||| || ||| ||||||| |||||   | || ||  | || ||||| |   |||||  |      || |  |  ||||| |   || |||  |   |   ||||  |   | ||  | |||  |  | 
AGAAGTAATTGAAGCACATTACTTGTTTGGAGCTGACTATGATCATATTGAGATTGTCATTCATCCACAATCAATCATACATTCAATGATTGAAACACAGgtataaaccttattctat-gttatgt---ttactgcattttg-atatccatatattcggatacaaatggatgaggaaccata-gccatagcacctacaagttccag

upper sequence: GRMZM2G056975_T02 (Zea mays), 5'ss of exon 9
lower sequence: Vv17s0000g08390.t01 (Vitis vinifera), 5'ss of exon 9
AGAAGTTATTGAAGCACATTATTTATTTGGTGCTGAATATGATGACATTGAGATTGTGATTCACCCACAGTCTATCATACACTCTATGGTTGAAACCCAGgtgagccctaaacc-atagttatatgttttactaaaaagcacatgttgaggtattctgc-ccagatgtagtgcttcatacact---gaaacatatccaaacttaa---------------------
|||||||||||||||||| ||| | ||||| |||||||||||||| ||||||||  | ||||| ||||| ||||||||||| |||||||| ||||| ||||| |    | | |  || ||  |   || | || ||    |  | || || | |      |||   | | || ||||||   |   ||| |   | |  |  |                       
AGAAGTTATTGAAGCACACTATCTGTTTGGGGCTGAATATGATGATATTGAGATCATAATTCATCCACAATCTATCATACATTCTATGGTCGAAACACAGgttaattgttatcttattgtcttggcttcttcttaa---tatgt-ttaagatgtcaaataccatcagaactgtttcatattttttagaagcggtttcttatgtcttctccacccctttctctccag

upper sequence: GRMZM2G056975_T02 (Zea mays), 5'ss of exon 9
lower sequence: EFJ09183 (Selaginella moellendorffii), 5'ss of exon 10
AGAAGTTATTGAAGCACATTATTTATTTGGTGCTGAATATGATGACATTGAGATTGTGATTCACCCACAGTCTATCATACACTCTATGGTTGAAACCCAGgtgagccctaaaccatagttatatgttttactaaaaagcacatgttgaggtattctgcccagatgtagtgcttcatacactgaaacatatccaaacttaa
 || || |||||||| || ||||| ||||| ||||| |||||||||||||| ||||| || || || || || || |||||||| ||| | || || |||||        ||    ||||  ||| || |  | | | |  |    |       ||   || ||  ||                                
CGAGGTCATTGAAGCTCACTATTTGTTTGGAGCTGACTATGATGACATTGACATTGTTATCCATCCCCAATCGATTATACACTCCATGATCGAGACACAGgt--------aatatgagttgaatgcttcaacacacaactaacacag-------ctagtcaaatacag--------------------------------

upper sequence: GRMZM2G056975_T02 (Zea mays), 5'ss of exon 9
lower sequence: EFJ07179 (Selaginella moellendorffii), 5'ss of exon 10
AGAAGTTATTGAAGCACATTATTTATTTGGTGCTGAATATGATGACATTGAGATTGTGATTCACCCACAGTCTATCATACACTCTATGGTTGAAACCCAGgtgagccctaaaccatagttatatgttttactaaaaagcacatgttgaggtattctgcccagatgtagtgcttcatacactgaaacatatccaaacttaa
 || || |||||||| || ||||| ||||| ||||| |||||||||||||| ||||| || || || || || || |||||||| ||| | || || |||||        ||    ||||  ||| || |  | | | |  |    |       ||   || ||  ||                                
CGAGGTCATTGAAGCTCACTATTTGTTTGGAGCTGACTATGATGACATTGACATTGTTATCCATCCCCAATCCATTATACACTCCATGATCGAGACACAGgt--------aatatgagttgaatgcttcaacacacaactaacacag-------ctagtcaaatacag--------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16379495|gb|BI992983.1|BI992983
EST:     ACTCTATGGTTGAAACCCAG                         GATTCATCTGTCCTAGCTCAGTTGGGATGGCCAGATATGCGGTTACCAATC
genomic: ACTCTATGGTTGAAACCCAGgtgagcccta ... gttctactagGATTCATCTGTCCTAGCTCAGTTGGGATGGCCAGATATGCGGTTACCAATC
EST: gi|14244555|gb|BG840684.2|BG840684
EST:     AGATTGTGATTCACCCACAGTCTATCATACACTCTATGGTTGAAACNCAG                         GATTCATCTGTCCTAGCTCAGTTGGGATGGCCAGATATGCGGTTACCAATC
genomic: AGATTGTGATTCACCCACAGTCTATCATACACTCTATGGTTGAAACCCAGgtgagcccta ... gttctactagGATTCATCTGTCCTAGCTCAGTTGGGATGGCCAGATATGCGGTTACCAATC
EST: gi|31362671|gb|CD447028.1|CD447028
EST:     AGATTGTGATTCACCCACAGTCTATCATACACTCTATAGTTGAAACCCAG                         GATTCATCTGTCCTAGCTCAGTTGGGATGGCCAGATATGCGGTTACCAATC
genomic: AGATTGTGATTCACCCACAGTCTATCATACACTCTATGGTTGAAACCCAGgtgagcccta ... gttctactagGATTCATCTGTCCTAGCTCAGTTGGGATGGCCAGATATGCGGTTACCAATC
EST: gi|14206809|gb|BG840487.1|BG840487
EST:     AGATTGTGATTCACCCACAGTCTATCATACACTCTATGGTTGAAACCCAG                         GATTCATCTGTCCT
genomic: AGATTGTGATTCACCCACAGTCTATCATACACTCTATGGTTGAAACCCAGgtgagcccta ... gttctactagGATTCATCTGTCCT
EST: gi|84970217|gb|DW468567.1|DW468567
EST:     AGATTGTGATTCACCCACAGTCTATCATACACTCTATGGTTGAAACCCAG                         GATTCATCTGTCCTAGCTCAGTTGGGATGGCCAGATATGCGGTTACCAATC
genomic: AGATTGTGATTCACCCACAGTCTATCATACACTCTATGGTTGAAACCCAGgtgagcccta ... gttctactagGATTCATCTGTCCTAGCTCAGTTGGGATGGCCAGATATGCGGTTACCAATC
EST: gi|71445034|gb|DR826084.1|DR826084
EST:     AGATTGTGATTCACCCACAGTCTATCATACACTCTATGGTTGAAACCCAG                         GATTCATCTGTCCTAGCTCAGTTGGGATGGCCAGATATGCGGTTACCAATC
genomic: AGATTGTGATTCACCCACAGTCTATCATACACTCTATGGTTGAAACCCAGgtgagcccta ... gttctactagGATTCATCTGTCCTAGCTCAGTTGGGATGGCCAGATATGCGGTTACCAATC
EST: gi|86474441|gb|DY240811.1|DY240811
EST:     AGATTGTGATTCACCCACAGTCTATCATACACTCTATGGTTGAAACCCAG                         GATTCATCTGTCCTAGCTCAGTTGGGATGGCCAGATATGCGGTTACCAATC
genomic: AGATTGTGATTCACCCACAGTCTATCATACACTCTATGGTTGAAACCCAGgtgagcccta ... gttctactagGATTCATCTGTCCTAGCTCAGTTGGGATGGCCAGATATGCGGTTACCAATC
EST: gi|32798103|gb|CD950339.1|CD950339
EST:     AGATTGTGATTCACCCACAGTCTATCATACACTCTATGGTTGAAACCCAG                         GATTCATCTGTCCTAGCTCAGTTGGGATGGCCAGATATGCGGTTACCAATC
genomic: AGATTGTGATTCACCCACAGTCTATCATACACTCTATGGTTGAAACCCAGgtgagcccta ... gttctactagGATTCATCTGTCCTAGCTCAGTTGGGATGGCCAGATATGCGGTTACCAATC