1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACAAGAAAAGCTGGTGAGTGAAAGATGGCTTCCGGAGCTGAGAAATGCAGTTCAAGAAGCTCGGAGGTGTTTTGATGACTGCCAGCGTGTTAGGGGCTTGgtaagccaatactagctttggtttaaattcctgtggctatgcctttgtttgtccaccctttcatggcgtcaaacagtatgttacatagcaacaactccattggttagatctgttgcagtcttgtaactcttgttatggtaaaacctgttagtcctgtgaccagtgaactcatgcttctatgttatttgcaacttccag
species | Zea mays |
transcript | GRMZM2G055917_T02 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTCAAGAAGCTCGGAGGTGTTTTGATGACTGCCAGCGTGTTAGGGGCTTG GTTGATGAGTGGTACGAGCAGCCAGCAGCCACAATTGTCGATTGGGTAACGEST: gi|60350836|gb|DN217809.1|DN217809
genomic: TTCAAGAAGCTCGGAGGTGTTTTGATGACTGCCAGCGTGTTAGGGGCTTGgtaagccaat ... caacttccagGTTGATGAGTGGTACGAGCAGCCAGCAGCCACAATTGTCGATTGGGTAACG
EST: TTCAAGAAGCTCGGAGGTGTTTTGATGACTGCCAGCGTGTTAGGGGCTTG GTTGATGAGTGGTACGAGCAGCCAGCAGCCACAATTGTCGATTGGGTAACGEST: gi|211185874|gb|FL440427.1|FL440427
genomic: TTCAAGAAGCTCGGAGGTGTTTTGATGACTGCCAGCGTGTTAGGGGCTTGgtaagccaat ... caacttccagGTTGATGAGTGGTACGAGCAGCCAGCAGCCACAATTGTCGATTGGGTAACG
EST: TTCAAGAAGCTCGGAGKTGTTTTGATGACTGCCAGCGTGTTAGGGGCTTG GTTGATGAGTGGTACGAGCAGCCAGCAGCCACAATTGTCGATTGGGTAACGEST: gi|60397456|gb|DN230272.1|DN230272
genomic: TTCAAGAAGCTCGGAGGTGTTTTGATGACTGCCAGCGTGTTAGGGGCTTGgtaagccaat ... caacttccagGTTGATGAGTGGTACGAGCAGCCAGCAGCCACAATTGTCGATTGGGTAACG
EST: TTCAAGAAGCTCGGAGGTGTTTTGATGACTGCCAGCGTGTTAGGGGCTTG GTTGATGAGTGGTACGAGCAGCCAGCAGCCACAATTGTCGATTGGGTAACGEST: gi|32856617|gb|CD996298.1|CD996298
genomic: TTCAAGAAGCTCGGAGGTGTTTTGATGACTGCCAGCGTGTTAGGGGCTTGgtaagccaat ... caacttccagGTTGATGAGTGGTACGAGCAGCCAGCAGCCACAATTGTCGATTGGGTAACG
EST: GACTGCCAGCGTGTTAGGGGCTTG GTTGATGAGTGGTACGAGCAGCCAGCAGCCACAATTGTCGATTGGGTAACGEST: gi|60396367|gb|DN229236.1|DN229236
genomic: GACTGCCAGCGTGTTAGGGGCTTGgtaagccaat ... caacttccagGTTGATGAGTGGTACGAGCAGCCAGCAGCCACAATTGTCGATTGGGTAACG
EST: TTCAAGAAGCTCGGAGGTGTTTTGATGACTGCCAGCGTGTTAGGGGCTTG GTTGATGAGTGGTACGAGCAGCCAGCAGCCACAATTGTCGATTGGGTAACGEST: gi|74234255|gb|DT642169.1|DT642169
genomic: TTCAAGAAGCTCGGAGGTGTTTTGATGACTGCCAGCGTGTTAGGGGCTTGgtaagccaat ... caacttccagGTTGATGAGTGGTACGAGCAGCCAGCAGCCACAATTGTCGATTGGGTAACG
EST: TTCAAGAAGCTCGGAGGTGTTTTGATGACTGCCAGCGTGTTAGGGGCTTG GTTGATGAGTGGTACGAGCAGCCAGCAGCCACAATTGTCGATTGGGTAACGEST: gi|211501173|gb|FL470498.1|FL470498
genomic: TTCAAGAAGCTCGGAGGTGTTTTGATGACTGCCAGCGTGTTAGGGGCTTGgtaagccaat ... caacttccagGTTGATGAGTGGTACGAGCAGCCAGCAGCCACAATTGTCGATTGGGTAACG
EST: TTCAAGAAGCTCGGAGGTGTTTTGATGACTGCCAGCGTGTTAGGGGCTTG GTTGATGAGTGGTACGAGCAGCCAGCAGCCACAATTGTCGATTGGGTAACGEST: gi|24765164|gb|CA400324.1|CA400324
genomic: TTCAAGAAGCTCGGAGGTGTTTTGATGACTGCCAGCGTGTTAGGGGCTTGgtaagccaat ... caacttccagGTTGATGAGTGGTACGAGCAGCCAGCAGCCACAATTGTCGATTGGGTAACG
EST: TTCAAGAAGCTCGGAGGTGTTTTGATGACTGCCAGCGTGTTAGGGGCTTG GTTGATGAGTGGTACGAGCAGCCAGCAGCCACAATTGTCGATTGGGTAACG
genomic: TTCAAGAAGCTCGGAGGTGTTTTGATGACTGCCAGCGTGTTAGGGGCTTGgtaagccaat ... caacttccagGTTGATGAGTGGTACGAGCAGCCAGCAGCCACAATTGTCGATTGGGTAACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAAGAAAAGCTGGTGAGTGAAAGATGGCTTCCGGAGCTGAGAAATGCAGTTCAAGAAGCTCGGAGGTGTTTTGATGACTGCCAGCGTGTTAGGGGCTTGgtaagccaatactagctttggtttaaattcctgtggctatgcctttgtttgtccaccctttcatggcgtcaaacagtatgttacatagcaacaactccattggttagatctgttgcagtcttgtaactcttgttatggtaaaacctgttagtcctgtgaccagtgaactcatgcttctatgttatttgcaacttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC