Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGATATATTTAACACCTTCATTGAGCTGTTACGCCAAACTGGTAATGTTACGAAAGGACAAGGCGACATCGATGAGTCCAGgtgaggttcatcgaactgcagttagaaaaactggtgccattattataacgtggtaatctggtctcatactgggcactagatatgaatgtatatcttgtttttgttgctatgcttagcagaaaaattctgcatttagattgcatgttctgtctcagtgtctcctgtccccatgcatcattctgttttgcttttcag

Basic information

species Zea mays
transcript GRMZM2G053644_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G053644_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g07120.1 (Oryza sativa), 5'ss of exon 11
ATGGATATATTTAACACCTTCATTGAGCTGTTACGCCAAACTGGTAATGTTACGAAAGGACAAGGCGACATCGATGAGTCCAGgtgaggttcatcgaactgcagttagaaaaactggtgccattattataacgtggtaatctggtctcatactgggcacta--gatatgaatgtatatctt----gtttttgttgctatgcttagcagaaaaattctgcatttagattgcatgttctgtctcagtgtctcctgtccccatgcatcattctgttttgcttttcag
||||| || |||||||| || |||||| |||||||||||||||||||  | || ||||||||||| ||||| |||||||| |||  || |  || |  ||    |  | |  | |  |  ||   |    | ||  ||      ||| || | |   | |   || ||   | || ||  |    |||  |  | | ||| ||||   |   |  |    ||   | | | | | || | ||||                                        
ATGGACATCTTTAACACATTTATTGAGTTGTTACGCCAAACTGGTAACATGACAAAAGGACAAGGTGACATTGATGAGTCTAGgcaag-tctattgtgctcttatgtgcatcattattttcaacttctccaagttatagc---atcttatgcagtttattggtgaaatacttttacatgcttgaagttgatcctaccatgtttagagcactgagcccatgttggcaatccttttgct-tttcag----------------------------------------

upper sequence: GRMZM2G053644_T02 (Zea mays), 5'ss of exon 9
lower sequence: Vv12s0035g01840.t01 (Vitis vinifera), 5'ss of exon 12
ATGGATATATTTAACACCTTCATTGAGCTGTTACGCCAAACTGGTAATGTTACGAAAGGACAAGGCGACATCGATGAGTCCAGgtgaggttcatcgaactgcagttagaaaaactggtgccattattataacgtggtaatctggtctcatactgggcactagatatgaatgtatatcttgtttttgttgctatgcttagcagaaaaattctgcatttagattgcatgttctgtctcagtgtctcctgtccccatgcatcattctgttttgcttttcag
|||||| | || || || || ||||||||  ||||||||||||| |||||||||||||| ||    |||||  ||||    |||| | ||| ||     |  ||||     || ||  |   ||||      |||  |      | |  |     | |     ||  || || |  ||||  | |          ||||                                                                               
ATGGATGTGTTCAATACATTTATTGAGCTACTACGCCAAACTGGAAATGTTACGAAAGGGCAGACTGACATGAATGAACTGAGgt-aagttgat---gttaaagtttcttcaattgccgagtttat------gtgcca------tttattgtgaagtatagattagaaaagtttcccttgaatctaaactctgaattag-------------------------------------------------------------------------------