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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGAGCCAGGACATGCATCGTGGTTGGACAAAATTCAGCAGACTGTACAGAATGTTTTCCAAAAATTCAACTTTTTTAGGACCCCTGTAGATTTGTCAGgtaatttgtatatagtggtttctaatcagtcgattcttcatgagtcatgagggtatgttataacattcgcatatcaactttttttag

Basic information

species Zea mays
transcript GRMZM2G052875_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G052875_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g16970.2 (Oryza sativa), 5'ss of exon 9
ACTGAGCCAGGACATGCATCGTGGTTGGACAAAATTCAGCAGACTGTACAGAATGTTTTCCAAAAATTCAACTTTTTTAGGACCCCTGTAGATTTGTCAGgtaatttgtatatagtggtttctaatcagtcgattcttcatgagtcatgagggtatgttataacattcgcatatcaactttttttag
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ACTGCCTCTGGGCAAGCATCATGGCTGGATAAAATTCAGCAAACTGTACAGAATGTTTTACGAACATTCAACTTTTTCAAGACCCCTGTGGATTTATCTGgtaggttgtgtattctacctgcta------tgatccttcaaaaatcatgtgag-atgctgtgtcacttattgatc--tcctttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211535329|gb|FL357693.1|FL357693
EST:     GAATGTTTTTCAAAAATTCAACTTTTTTAGGACCCCTGTAGATTTGTCAG                         AGGCTTCTCGCGTTCGTAAGGAGTATGACGATGCCAACTCAAAGCTTTCAA
genomic: GAATGTTTTCCAAAAATTCAACTTTTTTAGGACCCCTGTAGATTTGTCAGgtaatttgta ... ctttttttagAGGCTTCTCGTGTTCGTAAGGAGTATGACGATGCCAACTCAAAGCTTTCAA
EST: gi|211178585|gb|FL326372.1|FL326372
EST:     GAATGTTTTTCAAAAATTCAACTTTTTTAGGACCCCTGTAGATTTGTCAG                         AGGCTTCTCGCGTTCGTAAGGAGTATGACGATGCCAACTCAAAGCTTTCAA
genomic: GAATGTTTTCCAAAAATTCAACTTTTTTAGGACCCCTGTAGATTTGTCAGgtaatttgta ... ctttttttagAGGCTTCTCGTGTTCGTAAGGAGTATGACGATGCCAACTCAAAGCTTTCAA
EST: gi|211084967|gb|FL399106.1|FL399106
EST:     TTTTTAGGACCCCTGTAGATTTGTCAG                         AGGCTTCTCGTATTCGTAAGGAGTATGACGATGCCAACTCAAAGCTTTCAA
genomic: TTTTTAGGACCCCTGTAGATTTGTCAGgtaatttgta ... ctttttttagAGGCTTCTCGTGTTCGTAAGGAGTATGACGATGCCAACTCAAAGCTTTCAA
EST: gi|211072830|gb|FL342711.1|FL342711
EST:     GAATGTTTTTCAAAAATTCAACTTTTTTAGGACCCCTGTAGATTTGTCAG                         AGGCTTCTCGCGTTCGTAAGGAGTATGACGATGCCAACTCAAAGCTTTCAA
genomic: GAATGTTTTCCAAAAATTCAACTTTTTTAGGACCCCTGTAGATTTGTCAGgtaatttgta ... ctttttttagAGGCTTCTCGTGTTCGTAAGGAGTATGACGATGCCAACTCAAAGCTTTCAA
EST: gi|31359162|gb|CD443519.1|CD443519
EST:     GAATGTTTTTCAAAAATTCAACTTTTTTAGGACCCCTGTAGATTTGTCAG                         AGGCTTCTCGCGTTCGTAAGGAGTATGACGATGCCAACTCAAAGCTTTCAA
genomic: GAATGTTTTCCAAAAATTCAACTTTTTTAGGACCCCTGTAGATTTGTCAGgtaatttgta ... ctttttttagAGGCTTCTCGTGTTCGTAAGGAGTATGACGATGCCAACTCAAAGCTTTCAA
EST: gi|67026048|gb|CO454797.1|CO454797
EST:     GAATGTTTTTCAAAAATTCAACTTTTTTAGGACCCCTGTAGATTTGTCAG                         AGGCTTCTCGCGTTCGTAAGGAGTATGACGATGCCAACTCAAAGCTTTCAA
genomic: GAATGTTTTCCAAAAATTCAACTTTTTTAGGACCCCTGTAGATTTGTCAGgtaatttgta ... ctttttttagAGGCTTCTCGTGTTCGTAAGGAGTATGACGATGCCAACTCAAAGCTTTCAA