1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGTAGAGGAAGCTGGTGGGGTGGTAACTCGCATGGACGGTGGAGAGTTTACGGTCTTCGATCGCTCTGTTCTTGTTTCCAACGGACTTGTTCATGGACAGgtttgtttgttgtcaacaatttggcatattgtttgtggcgttcatggacaggttttgttcttagtgttgtctgtgtggacag
species | Zea mays |
transcript | GRMZM2G051276_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CGGTCTTCGATCGCTCTGTTCTTGTTTCCAACGGACTTGTTCATGGACAG CTTTTGGACCGGATCGGCCCTCCTACTGAAGACCTTAAGAAGAAAGGGATCEST: gi|32921409|gb|CF026221.1|CF026221
genomic: CGGTCTTCGATCGCTCTGTTCTTGTTTCCAACGGACTTGTTCATGGACAGgtttgtttgt ... gtgtggacagCTTTTGGACCGGATCGGCCCTCCTACTGAAGACCTTAAGAAGAAAGGGATC
EST: CGGTCTTCGATCGCTCTGTTCTTGTTTCCAACGGACTTGTTCATGGACAG CTTTTGGACCGGATCGGCCCTCCTACTGAAGACCTTAAGAAGAAAGGGATCEST: gi|32849542|gb|CD989223.1|CD989223
genomic: CGGTCTTCGATCGCTCTGTTCTTGTTTCCAACGGACTTGTTCATGGACAGgtttgtttgt ... gtgtggacagCTTTTGGACCGGATCGGCCCTCCTACTGAAGACCTTAAGAAGAAAGGGATC
EST: CGGTCTTCGATCGCTCTGTTCTTGTTTCCAACGGACTTGTTCATGGACAG CTTTTGGACCGGATCGGCCCTCCTACTGAAGACCTTAAGAAGAAAGGGATCEST: gi|32921295|gb|CF026107.1|CF026107
genomic: CGGTCTTCGATCGCTCTGTTCTTGTTTCCAACGGACTTGTTCATGGACAGgtttgtttgt ... gtgtggacagCTTTTGGACCGGATCGGCCCTCCTACTGAAGACCTTAAGAAGAAAGGGATC
EST: CGGTCTTCGATCGCTCTGTTCTTGTTTCCAACGGACTTGTTCATGGACAG CTTTTGGACCGGATCGGCCCTCCTACTGAAGACCTTAAGAAGAAAGGGATC
genomic: CGGTCTTCGATCGCTCTGTTCTTGTTTCCAACGGACTTGTTCATGGACAGgtttgtttgt ... gtgtggacagCTTTTGGACCGGATCGGCCCTCCTACTGAAGACCTTAAGAAGAAAGGGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTAGAGGAAGCTGGTGGGGTGGTAACTCGCATGGACGGTGGAGAGTTTACGGTCTTCGATCGCTCTGTTCTTGTTTCCAACGGACTTGTTCATGGACAGgtttgtttgttgtcaacaatttggcatattgtttgtggcgttcatggacaggttttgttcttagtgttgtctgtgtggacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA